Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
fishpond
•
reset
2
votes
2
replies
2.0k
views
Volcano plots of DEGs from Swish are weird
DESeq2
fishpond
salmon
swish
2.6 years ago
Qin
▴ 10
5
votes
9
replies
1.5k
views
Questions regarding failing tximeta import for swish
swish
fishpond
GenomicFeatures
tximeta
updated 20 months ago by
Michael Love
41k • written 2.0 years ago by
jvandinter
• 0
0
votes
6
replies
1.4k
views
Running swish on a non-reference transcript assembly / tximeta import issue
tximeta
swish
fishpond
updated 3.0 years ago by
Michael Love
41k • written 3.0 years ago by
Jack Riley
• 0
0
votes
8
replies
1.4k
views
swish in a blocking design?
fishpond
swish
2.2 years ago • updated 2.1 years ago
msll0802
• 0
1
vote
3
replies
1.4k
views
Two Genotypes Four Treatments RNA-seq Analysis
salmon
rna-seq
swish
bootstrap
fishpond
updated 2.2 years ago by
Michael Love
41k • written 2.2 years ago by
samuelcjx
• 0
3
votes
6
replies
1.3k
views
Swish with covariate for batch effect
swish
fishpond
3.5 years ago
thomas.dugedebernonville
• 0
0
votes
8
replies
1.3k
views
Swish log2FC NA output
swish
fishpond
DifferentialExpression
20 months ago
jvandinter
• 0
3
votes
5
replies
1.2k
views
Swish (fishpond) scaled counts result
Swish
fishpond
3.2 years ago • updated 3.1 years ago
675743
▴ 20
4
votes
7
replies
1.0k
views
Fishpond/Swish Interaction Test Error
fishpond
swish
10 months ago
Miguel
▴ 20
1
vote
2
replies
1.0k
views
Swish direction of comparison based on order of factors
fishpond
2.6 years ago
Jean
• 0
1
vote
3
replies
999
views
Swish: contrasts and interactions
fishpond
DESeq2
updated 11 months ago by
Michael Love
41k • written 20 months ago by
alexyz
• 0
1
vote
1
reply
981
views
Swish with more than two conditions. Add support for contrasts?
tximeta
DESeq2
swish
fishpond
updated 2.2 years ago by
Michael Love
41k • written 2.2 years ago by
jeremymsimon
▴ 20
3
votes
2
replies
858
views
the result of swish function from fishpond package
fishpond
swish
updated 3.8 years ago by
Michael Love
41k • written 3.8 years ago by
1911449
• 0
1
vote
3
replies
774
views
collapseReplicates error after tximeta
fishpond
tximeta
DESeq2
updated 6 months ago by
Michael Love
41k • written 14 months ago by
Rihards Saksis
• 0
0
votes
3
replies
657
views
Fishpond with unbalanced dataset
rna-seq
salmon
fishpond
swish
updated 10 months ago by
Michael Love
41k • written 10 months ago by
samuelcjx
• 0
0
votes
3
replies
278
views
Interaction tests and paired interaction tests in swish
swish
salmon
fishpond
updated 11 weeks ago by
Michael Love
41k • written 12 weeks ago by
Nicholas
• 0
16 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 setting significant p-value
by
Dev
• 0
after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…
Comment: Reading huge bismark coverage files using bbseq::read.bismark
by
jacques.imbert
• 0
Hello, Using nThread = 1L fixed the issue. Thank you for your time and help.
Comment: Error in champ.load(): The following specified files do not exist
by
Basti
▴ 760
The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/
Comment: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Votes
Comment: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
Awards
• All
Popular Question
to
paria.alipour
• 0
Popular Question
to
Eman
• 0
Popular Question
to
James W. MacDonald
65k
Scholar
to
nhaus
▴ 30
Popular Question
to
shepherl
3.8k
Locations
• All
India,
just now
France,
8 minutes ago
France,
10 minutes ago
WEHI, Melbourne, Australia,
17 minutes ago
Germany,
28 minutes ago
Traffic: 783 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6