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flowBeads
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Spam: Drug Discovery
flowBeads
11 months ago Zoe 0
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Answer: Limma suqeezeVar by Gordon Smyth 52k
I am not quite clear why you're not using the limma package directly, which will compute all the variances and the df automatically for you…
Comment: Discrepancies in normalised count data vs unnormalised by swbarnes2 ★ 1.4k
Well, that's going to make each sample normalize quite differently. So you should expect large difference between normalized and unnormali…
Comment: Can't install BioC packages (and manager) behind firewall by Marcel Ramos 700
Hi Delphine, Please make sure that your SSL certificates are up to date. Check with your system's administrator. Your browser may be usin…
Comment: Limma trend with limpa by Alejandro • 0
Dear Gordon, Thank you very much!
Answer: DESeq2 from phyloseq error by asafpr • 0
Apparently, I left this line: ```r setClassUnion("ExpData", c("matrix", "SummarizedExperiment")) ``` to patch the ExpData issue which was …
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Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
Comment: Check removeBatchEffect effectiveness
Answer: Check removeBatchEffect effectiveness
A: what should I do with many zero counts from Salmon quantification
Comment: parameters of filterByExpr
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