Bioconductor FlowCore

Showing : flowCore • reset

votes

replies

104

views

FlowCytometry flowWorkspace flowCore

5 weeks ago taylor.witte • 0

vote

238

views

flowWorkspace flowCore CytoML

updated 4 weeks ago by SamGG ▴ 350 • written 9 weeks ago by jarod ▴ 30

votes

replies

208

views

flowDensity flowCore

3 months ago info ▴ 10

votes

replies

870

views

read.FCS flowCore

updated 4 months ago by SamGG ▴ 350 • written 4 months ago by das.traveller • 0

vote

358

views

flowCore

updated 4 months ago by James W. MacDonald 65k • written 4 months ago by Gabriel ▴ 10

votes

replies

413

views

Partec read.FCS flowCore

5 months ago mrescan • 0

votes

replies

370

views

flowCore cytoMEM

9 months ago aguirre ▴ 20

votes

replies

495

views

Source flowCore Repository git

updated 12 months ago by shepherl 3.8k • written 12 months ago by dominic.r • 0

votes

replies

1.6k

views

ncdfFlow flowCore

updated 7 months ago by osayou • 0 • written 3.5 years ago by anders.tondell ▴ 30

9 results • Page 1 of 1

Recent ...

Replies

Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k

> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …

Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.

Answer: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k

Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…

Comment: get BM error by James W. MacDonald 65k

I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…

Votes

Answer: How to retrieve gene ontology GO class from gene list?

C: when to apply quantile normalization with voom in limma/voom framework with RNA-

A: How to know if I should use voomWithQualityWeights() or not?

A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom

Awards • All