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flowSET
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How do you re-order .fcs files in a flowSet?
flowcore
flowset
bioconductor
flow cytometry
fcs file
6.2 years ago
Samuel Ahuno
• 0
2
votes
2
replies
2.2k
views
How to append cluster and UMAP data to a flowSet?
flow
cytometry
flowSet
UMAP
.fcs files
updated 4.7 years ago by
mikhael.manurung
▴ 270 • written 4.7 years ago by
s.lucasblack
• 0
0
votes
1
reply
1.9k
views
Exporting FCS files from GatingSet
flowcore
opencyto gating
flowset
updated 7.2 years ago by
Jiang, Mike
★ 1.3k • written 7.2 years ago by
jordan.xanthopoulos
• 0
0
votes
1
reply
1.1k
views
[flowSOM] extracting data from tree
flowcytometry
flowSOM
flowSET
flowFrame
5.0 years ago
fabrizio.benedetti.82
• 0
0
votes
0
replies
819
views
Visualize FlowSet by Date
FlowSet
data visualization
cellcounts
6.9 years ago
Maria
• 0
5 results • Page
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
Answer: Log-cpm values from limma
Answer: Log-cpm values from limma
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