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flowWorkspace
•
reset
1
vote
9
replies
2.2k
views
Problem with ggcyto/flowWorkspace from GitHub
software error
flowworkspace
opencyto
6.6 years ago
anders.tondell
▴ 30
0
votes
2
replies
1.8k
views
OpenCyto -- proper gating of CD45
opencyto gating
flowworkspace
updated 6.3 years ago by
Jiang, Mike
★ 1.3k • written 6.3 years ago by
Ulrik Stervbo
▴ 30
1
vote
1
reply
1.7k
views
uploading xml file in flowworkspace
flowworkspace
xml
R
flowjo
updated 2.8 years ago by
Abby Moore
• 0 • written 5.4 years ago by
Ekaterina Terskikh
▴ 10
0
votes
1
reply
1.5k
views
reading an ".xml" file as FlowJo Workspace file
opencyto gating
opencyto
flowcore
flowworkspace
updated 6.3 years ago by
Jiang, Mike
★ 1.3k • written 6.3 years ago by
anara92
• 0
2
votes
5
replies
1.4k
views
Workflow highthroughputassays can't install properly
workflows
flowcore
flowstats
flowworkspace
5.5 years ago
kristoffer.haurum
• 0
3
votes
0
replies
1.4k
views
An appeal to flow cytometry tools users
flow
flowcore
flowworkspace
cytometry
gating
5.6 years ago
Greg Finak
▴ 240
0
votes
1
reply
1.3k
views
FlowWorkspace and norm2Filter
flowcytometry
opencyto
flowworkspace
flowcore
6.5 years ago
Jiang, Mike
★ 1.3k
2
votes
5
replies
1.2k
views
How to find Geometric Mean from gated Quantibeads
flowworkspace
opencyto
updated 5.0 years ago by
Jiang, Mike
★ 1.3k • written 5.0 years ago by
justinyi10
▴ 10
2
votes
1
reply
1.2k
views
Trouble parsing a workspace in flowWorkspace
flowworkspace
opencyto
updated 6.4 years ago by
lovetatting
▴ 10 • written 6.4 years ago by
wir.traumen
▴ 10
1
vote
6
replies
1.2k
views
flowWorkspace: Crash when using getPopStats with format="wide"
flowworkspace
6.6 years ago
Viktor Thiel
• 0
2
votes
5
replies
1.1k
views
Memory problem using openWorkspace()
flowworkspace
7.8 years ago
Silke Zachariae
▴ 30
1
vote
1
reply
1.1k
views
Understanding Flow cytometry data
flow cytometry
flowcore
flowclean
rflowcyt
flowworkspace
updated 6.7 years ago by
Jiang, Mike
★ 1.3k • written 6.7 years ago by
magomudw
• 0
0
votes
0
replies
1.0k
views
flowWorkspace and ggcyto
flowworkspace
flow cytometry
visualization
7.0 years ago
Jiang, Mike
★ 1.3k
0
votes
1
reply
1.0k
views
flowWorkspace transformation on FCS 3 data (Nikolas)
PROcess
flowWorkspace
PROcess
flowWorkspace
updated 10.3 years ago by
Nikolas
▴ 30 • written 10.4 years ago by
Greg Finak
▴ 240
0
votes
0
replies
991
views
On boolean combinations (flowWorkspace)
flowworkspace
flow cytometry
7.2 years ago
Jiang, Mike
★ 1.3k
2
votes
2
replies
973
views
Problem updating flowWorkspace -- error: unrecognized command line option "-ftemplate-depth=900"
flowWorkspace
updated 6.8 years ago by
Jiang, Mike
★ 1.3k • written 6.8 years ago by
sebastian.luna.valero
• 0
0
votes
0
replies
959
views
flowWorkspace transformation on FCS 3 data
PROcess
flowWorkspace
PROcess
flowWorkspace
10.4 years ago
Nikolas
▴ 30
0
votes
4
replies
953
views
Trying to plot MFI using Flowworkspace but parameters are transformed by 'flowjo_biexp'. How do I get untransformed values?
flowworkspace
updated 4.2 years ago by
Jiang, Mike
★ 1.3k • written 4.2 years ago by
mark.brown
• 0
0
votes
3
replies
914
views
Displaying Negative data from flow cytometers
flowcore
flowworkspace
flowviz
updated 6.8 years ago by
Jiang, Mike
★ 1.3k • written 6.8 years ago by
arnaud.colantonio
• 0
0
votes
2
replies
890
views
Exporting to FlowJo
flowworkspace
6.7 years ago
hunjoong.lee
• 0
1
vote
3
replies
866
views
Unable to install flowWorkspace from github
flowWorkspace
cytoutils
updated 4.4 years ago by
Martin Morgan
25k • written 4.4 years ago by
anders.tondell
▴ 30
0
votes
5
replies
862
views
getIndices identifies non existing cells in a gate
flowworkspace
getIndices
updated 5.5 years ago by
Jiang, Mike
★ 1.3k • written 5.5 years ago by
helena_t
• 0
0
votes
2
replies
842
views
on extend_val parameter in parseWorkspace
flowworkspace
updated 6.4 years ago by
Jiang, Mike
★ 1.3k • written 6.4 years ago by
lovetatting
▴ 10
2
votes
4
replies
821
views
Parsing flowWorkspace data
opencyto
R
flowworkspace
bioconductor
updated 5.7 years ago by
Jiang, Mike
★ 1.3k • written 5.7 years ago by
Rivka
• 0
2
votes
3
replies
815
views
FlowJo workspace cannot be parsed with flowworkspace
flowworkspace
parseWorkspace
parseWorkspace
updated 3.9 years ago by
Jiang, Mike
★ 1.3k • written 3.9 years ago by
vonskopnik
▴ 10
1
vote
2
replies
778
views
flowWorkspace doesn't allow channels that are named as subset (edit: substring) of other (PE-A and PE-Alexa Fluor 700-A eg.)
flowWorkspace
updated 6.7 years ago by
Jiang, Mike
★ 1.3k • written 6.7 years ago by
lovetatting
▴ 10
0
votes
1
reply
688
views
exporting bi-exponetially transformed data as CVS
flowWorkspace
flowcore
updated 5.6 years ago by
Jiang, Mike
★ 1.3k • written 5.6 years ago by
Aki Hoji
▴ 10
1
vote
3
replies
604
views
Cannot inverse transform GatingSet
flowworkspace
flow cytometry
flow workspace
updated 3.3 years ago by
Jake Wagner
▴ 300 • written 3.3 years ago by
mfahlber
• 0
0
votes
1
reply
586
views
how to get MFI stats from data
flowCore
flowStats
flowUtils
flowWorkspace
updated 11 months ago by
Jiang, Mike
★ 1.3k • written 15 months ago by
Khai-Chuong
• 0
5
votes
4
replies
542
views
ggcyto wrong axis scale?
ggcyto
flowWorkspace
flow cytometry
flowjo
updated 2.2 years ago by
Kevin Blighe
3.6k • written 2.2 years ago by
andrej.stoll.de
▴ 10
1
vote
3
replies
518
views
Problem parsing data with parseWorkspace
flowWorkspace
2.9 years ago
jokup101
• 0
4
votes
5
replies
496
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace
flowCore
openCyto
flowFrame
F-measure
updated 2.4 years ago by
Jake Wagner
▴ 300 • written 2.4 years ago by
stefankolling+github
• 0
3
votes
2
replies
476
views
flowWorkspace cannot load external data
flowWorkspace
external data
flowCore
3.0 years ago
Brent.OCarrigan
• 0
0
votes
1
reply
469
views
How to adjust plotGate axis?
flowworkspace
5.1 years ago
justinyi10
▴ 10
0
votes
1
reply
467
views
How to get popStats from wsp
flowworkspace
updated 3.7 years ago by
Jiang, Mike
★ 1.3k • written 3.7 years ago by
vonskopnik
▴ 10
0
votes
1
reply
275
views
Getting a dataset that only contains the flow data within the gated area
flowWorkspace
updated 11 months ago by
Jiang, Mike
★ 1.3k • written 11 months ago by
henry
• 0
0
votes
0
replies
248
views
Job:
Post-Doctoral Bioinformatics Research Scientist / Bioinformatician II
flowWorkspace
CytoGLMM
FlowSOM
9 months ago
hbolouri
• 0
37 results • Page
1 of 1
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Replies
Comment: DESeq 2 failes to load
by
Ruggero
• 0
This solved the error, in case someone else is having compilation errors from installing RSQllite: install.packages('RSQLite', repos='http…
Comment: pathview says my nonmodel species is unknown: "species invalid"
by
Guido Hooiveld
★ 3.3k
A while ago a faced the same for another non-model organism. I was able to get it working using a 'hack'. This hack is nothing more than ma…
Comment: pathview says my nonmodel species is unknown: "species invalid"
by
James W. MacDonald
60k
Ah, I get it. So what happens if you provide a species code (which can be an actual species code or the genus and species or even a common …
Comment: pathview says my nonmodel species is unknown: "species invalid"
by
nute11a
• 0
Hi James, thanks so much for your response! I actually did: ``` test <- pathview(gene.data=geneList, pathway.id="00440", species="ppyr") ``…
Comment: DESeq2 on normalized data
by
ATpoint
★ 1.4k
It’s not supported. Use limma-trend with the log2-transformed normalized counts if that is all you have. See limma manual.
Votes
Answer: How to remove dendrogram from pheatmaps?
A: conceptual question about FDR, FDR adjusted p-value and q-value
A: conceptual question about FDR, FDR adjusted p-value and q-value
A: How to select summit size for histone ChiP-Seq in Diffbind
Answer: Unable to download supplementary files from GSE146963 using GEOquery
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