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flowWorkspace
•
reset
1
vote
9
replies
3.1k
views
Problem with ggcyto/flowWorkspace from GitHub
software error
flowworkspace
opencyto
8.3 years ago
anders.tondell
▴ 30
1
vote
6
replies
1.7k
views
flowWorkspace: Crash when using getPopStats with format="wide"
flowworkspace
8.3 years ago
Viktor Thiel
• 0
2
votes
5
replies
1.8k
views
How to find Geometric Mean from gated Quantibeads
flowworkspace
opencyto
updated 6.7 years ago by
Jiang, Mike
★ 1.3k • written 6.7 years ago by
justinyi10
▴ 10
2
votes
5
replies
1.5k
views
Memory problem using openWorkspace()
flowworkspace
9.5 years ago
Silke Zachariae
▴ 30
0
votes
5
replies
1.4k
views
getIndices identifies non existing cells in a gate
flowworkspace
getIndices
updated 7.2 years ago by
Jiang, Mike
★ 1.3k • written 7.2 years ago by
helena_t
• 0
4
votes
5
replies
1.1k
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace
flowCore
openCyto
flowFrame
F-measure
updated 4.0 years ago by
Jake Wagner
▴ 310 • written 4.0 years ago by
stefankolling+github
• 0
2
votes
5
replies
2.1k
views
Workflow highthroughputassays can't install properly
workflows
flowcore
flowstats
flowworkspace
7.2 years ago
kristoffer.haurum
• 0
0
votes
4
replies
1.9k
views
Trying to plot MFI using Flowworkspace but parameters are transformed by 'flowjo_biexp'. How do I get untransformed values?
flowworkspace
updated 5.9 years ago by
Jiang, Mike
★ 1.3k • written 5.9 years ago by
mark.brown
• 0
2
votes
4
replies
1.3k
views
Parsing flowWorkspace data
opencyto
R
flowworkspace
bioconductor
updated 7.4 years ago by
Jiang, Mike
★ 1.3k • written 7.4 years ago by
Rivka
• 0
5
votes
4
replies
1.5k
views
ggcyto wrong axis scale?
ggcyto
flowWorkspace
flow cytometry
flowjo
updated 3.9 years ago by
Kevin Blighe
★ 3.9k • written 3.9 years ago by
andrej.stoll.de
▴ 10
1
vote
3
replies
1.2k
views
Cannot inverse transform GatingSet
flowworkspace
flow cytometry
flow workspace
updated 4.9 years ago by
Jake Wagner
▴ 310 • written 4.9 years ago by
mfahlber
• 0
0
votes
3
replies
1.3k
views
Displaying Negative data from flow cytometers
flowcore
flowworkspace
flowviz
updated 8.5 years ago by
Jiang, Mike
★ 1.3k • written 8.5 years ago by
arnaud.colantonio
• 0
2
votes
3
replies
1.4k
views
FlowJo workspace cannot be parsed with flowworkspace
flowworkspace
parseWorkspace
parseWorkspace
updated 5.6 years ago by
Jiang, Mike
★ 1.3k • written 5.6 years ago by
vonskopnik
▴ 10
1
vote
3
replies
1.1k
views
Problem parsing data with parseWorkspace
flowWorkspace
4.5 years ago
jokup101
• 0
1
vote
3
replies
1.5k
views
Unable to install flowWorkspace from github
flowWorkspace
cytoutils
updated 6.1 years ago by
Martin Morgan
25k • written 6.1 years ago by
anders.tondell
▴ 30
3
votes
2
replies
1.0k
views
flowWorkspace cannot load external data
flowWorkspace
external data
flowCore
4.7 years ago
Brent.OCarrigan
• 0
0
votes
2
replies
175
views
arm64 Update to flowWorkspace (4.14.2)
flowWorkspace
7 weeks ago • updated 6 weeks ago
rgong1
• 0
2
votes
2
replies
1.4k
views
Problem updating flowWorkspace -- error: unrecognized command line option "-ftemplate-depth=900"
flowWorkspace
updated 8.4 years ago by
Jiang, Mike
★ 1.3k • written 8.4 years ago by
sebastian.luna.valero
• 0
1
vote
2
replies
1.2k
views
flowWorkspace doesn't allow channels that are named as subset (edit: substring) of other (PE-A and PE-Alexa Fluor 700-A eg.)
flowWorkspace
updated 8.4 years ago by
Jiang, Mike
★ 1.3k • written 8.4 years ago by
lovetatting
▴ 10
0
votes
2
replies
1.3k
views
Exporting to FlowJo
flowworkspace
8.4 years ago
hunjoong.lee
• 0
0
votes
2
replies
1.2k
views
on extend_val parameter in parseWorkspace
flowworkspace
updated 8.1 years ago by
Jiang, Mike
★ 1.3k • written 8.1 years ago by
lovetatting
▴ 10
0
votes
2
replies
2.4k
views
OpenCyto -- proper gating of CD45
opencyto gating
flowworkspace
updated 8.0 years ago by
Jiang, Mike
★ 1.3k • written 8.0 years ago by
Ulrik Stervbo
▴ 30
0
votes
1
reply
1.0k
views
exporting bi-exponetially transformed data as CVS
flowWorkspace
flowcore
updated 7.2 years ago by
Jiang, Mike
★ 1.3k • written 7.2 years ago by
Aki Hoji
▴ 10
1
vote
1
reply
2.0k
views
uploading xml file in flowworkspace
flowworkspace
xml
R
flowjo
updated 4.4 years ago by
Abby Moore
• 0 • written 7.1 years ago by
Ekaterina Terskikh
▴ 10
0
votes
1
reply
722
views
How to adjust plotGate axis?
flowworkspace
6.8 years ago
justinyi10
▴ 10
0
votes
1
reply
2.1k
views
reading an ".xml" file as FlowJo Workspace file
opencyto gating
opencyto
flowcore
flowworkspace
updated 8.0 years ago by
Jiang, Mike
★ 1.3k • written 8.0 years ago by
anara92
• 0
2
votes
1
reply
1.7k
views
Trouble parsing a workspace in flowWorkspace
flowworkspace
opencyto
updated 8.1 years ago by
lovetatting
▴ 10 • written 8.1 years ago by
wir.traumen
▴ 10
0
votes
1
reply
1.8k
views
FlowWorkspace and norm2Filter
flowcytometry
opencyto
flowworkspace
flowcore
8.1 years ago
Jiang, Mike
★ 1.3k
1
vote
1
reply
1.4k
views
Understanding Flow cytometry data
flow cytometry
flowcore
flowclean
rflowcyt
flowworkspace
updated 8.4 years ago by
Jiang, Mike
★ 1.3k • written 8.4 years ago by
magomudw
• 0
0
votes
1
reply
855
views
How to get popStats from wsp
flowworkspace
updated 5.3 years ago by
Jiang, Mike
★ 1.3k • written 5.3 years ago by
vonskopnik
▴ 10
0
votes
1
reply
1.3k
views
flowWorkspace transformation on FCS 3 data (Nikolas)
PROcess
flowWorkspace
PROcess
flowWorkspace
updated 12.0 years ago by
Nikolas
▴ 30 • written 12.0 years ago by
Greg Finak
▴ 240
0
votes
1
reply
1.4k
views
how to get MFI stats from data
flowCore
flowStats
flowUtils
flowWorkspace
updated 2.6 years ago by
Jiang, Mike
★ 1.3k • written 3.0 years ago by
Khai-Chuong
• 0
0
votes
1
reply
793
views
Getting a dataset that only contains the flow data within the gated area
flowWorkspace
updated 2.6 years ago by
Jiang, Mike
★ 1.3k • written 2.6 years ago by
henry
• 0
1
vote
1
reply
228
views
FCS3.2 reading
flowWorkspace
flowCore
CytoML
updated 23 days ago by
SamGG
▴ 350 • written 8 weeks ago by
jarod
▴ 30
0
votes
0
replies
97
views
Macsquant FCS in read.FCS & opencyto
FlowCytometry
flowWorkspace
flowCore
28 days ago
taylor.witte
• 0
0
votes
0
replies
1.3k
views
flowWorkspace transformation on FCS 3 data
PROcess
flowWorkspace
PROcess
flowWorkspace
12.0 years ago
Nikolas
▴ 30
0
votes
0
replies
1.4k
views
On boolean combinations (flowWorkspace)
flowworkspace
flow cytometry
8.9 years ago
Jiang, Mike
★ 1.3k
0
votes
0
replies
1.5k
views
flowWorkspace and ggcyto
flowworkspace
flow cytometry
visualization
8.7 years ago
Jiang, Mike
★ 1.3k
3
votes
0
replies
1.7k
views
An appeal to flow cytometry tools users
flow
flowcore
flowworkspace
cytometry
gating
7.2 years ago
Greg Finak
▴ 240
0
votes
0
replies
765
views
Job:
Post-Doctoral Bioinformatics Research Scientist / Bioinformatician II
flowWorkspace
CytoGLMM
FlowSOM
2.4 years ago
hbolouri
• 0
40 results • Page
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Comment: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures
by
Gordon Smyth
50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma
by
Gordon Smyth
50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups.
by
Chris
• 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…
Comment: Single-Cell Data Simulation from Bulk RNA-seq
by
wichaidi
• 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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