Showing : flowWorkspace • reset
5
votes
4
replies
2.1k
views
ggcyto wrong axis scale?
ggcyto flowWorkspace flow cytometry flowjo
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by ▴ 10
4
votes
5
replies
1.5k
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 4.9 years ago by ▴ 310 • written 4.9 years ago by • 0
3
votes
0
replies
1.9k
views
An appeal to flow cytometry tools users
flow flowcore flowworkspace cytometry gating
8.1 years ago Greg Finak ▴ 240
3
votes
2
replies
1.3k
views
flowWorkspace cannot load external data
flowWorkspace external data flowCore
5.5 years ago Brent.OCarrigan • 0
2
votes
3
replies
1.9k
views
FlowJo workspace cannot be parsed with flowworkspace
flowworkspace parseWorkspace parseWorkspace
updated 6.4 years ago by ★ 1.3k • written 6.4 years ago by ▴ 10
2
votes
4
replies
1.6k
views
Parsing flowWorkspace data
opencyto R flowworkspace bioconductor
updated 8.2 years ago by ★ 1.3k • written 8.2 years ago by • 0
2
votes
5
replies
1.8k
views
Memory problem using openWorkspace()
flowworkspace
10.3 years ago Silke Zachariae ▴ 30
2
votes
5
replies
2.2k
views
How to find Geometric Mean from gated Quantibeads
flowworkspace opencyto
updated 7.5 years ago by ★ 1.3k • written 7.5 years ago by ▴ 10
2
votes
1
reply
2.0k
views
Trouble parsing a workspace in flowWorkspace
flowworkspace opencyto
updated 8.9 years ago by ▴ 10 • written 8.9 years ago by ▴ 10
2
votes
5
replies
2.4k
views
Workflow highthroughputassays can't install properly
workflows flowcore flowstats flowworkspace
8.0 years ago kristoffer.haurum • 0
2
votes
2
replies
1.6k
views
Problem updating flowWorkspace -- error: unrecognized command line option "-ftemplate-depth=900"
flowWorkspace
updated 9.3 years ago by ★ 1.3k • written 9.3 years ago by • 0
1
vote
2
replies
1.4k
views
flowWorkspace doesn't allow channels that are named as subset (edit: substring) of other (PE-A and PE-Alexa Fluor 700-A eg.)
flowWorkspace
updated 9.2 years ago by ★ 1.3k • written 9.2 years ago by ▴ 10
1
vote
1
reply
2.3k
views
uploading xml file in flowworkspace
flowworkspace xml R flowjo
updated 5.2 years ago by • 0 • written 7.9 years ago by ▴ 10
1
vote
9
replies
3.6k
views
Problem with ggcyto/flowWorkspace from GitHub
software error flowworkspace opencyto
9.1 years ago anders.tondell ▴ 30
1
vote
3
replies
1.8k
views
Unable to install flowWorkspace from github
flowWorkspace cytoutils
updated 6.9 years ago by 25k • written 6.9 years ago by ▴ 30
1
vote
6
replies
2.0k
views
flowWorkspace: Crash when using getPopStats with format="wide"
flowworkspace
9.1 years ago Viktor Thiel • 0
1
vote
3
replies
1.6k
views
Cannot inverse transform GatingSet
flowworkspace flow cytometry flow workspace
updated 5.8 years ago by ▴ 310 • written 5.8 years ago by • 0
1
vote
3
replies
1.4k
views
Problem parsing data with parseWorkspace
flowWorkspace
5.4 years ago jokup101 • 0
1
vote
1
reply
609
views
FCS3.2 reading
flowWorkspace flowCore CytoML
updated 10 months ago by ▴ 360 • written 12 months ago by ▴ 30
1
vote
1
reply
1.7k
views
Understanding Flow cytometry data
flow cytometry flowcore flowclean rflowcyt flowworkspace
updated 9.2 years ago by ★ 1.3k • written 9.2 years ago by • 0
0
votes
3
replies
390
views
How to combine multiple lists of cytoframes/cytocq data objects into one
flowWorkspace cytocq
updated 6 months ago by ▴ 360 • written 6 months ago by ▴ 30
0
votes
0
replies
1.5k
views
flowWorkspace transformation on FCS 3 data
PROcess flowWorkspace PROcess flowWorkspace
12.8 years ago Nikolas ▴ 30
0
votes
0
replies
1.7k
views
On boolean combinations (flowWorkspace)
flowworkspace flow cytometry
9.7 years ago Jiang, Mike ★ 1.3k
0
votes
0
replies
1.7k
views
flowWorkspace and ggcyto
flowworkspace flow cytometry visualization
9.5 years ago Jiang, Mike ★ 1.3k
0
votes
3
replies
1.5k
views
Displaying Negative data from flow cytometers
flowcore flowworkspace flowviz
updated 9.3 years ago by ★ 1.3k • written 9.3 years ago by • 0
0
votes
2
replies
1.6k
views
Exporting to FlowJo
flowworkspace
9.2 years ago hunjoong.lee • 0
0
votes
1
reply
2.1k
views
FlowWorkspace and norm2Filter
flowcytometry opencyto flowworkspace flowcore
8.9 years ago Jiang, Mike ★ 1.3k
0
votes
2
replies
1.4k
views
on extend_val parameter in parseWorkspace
flowworkspace
updated 8.9 years ago by ★ 1.3k • written 8.9 years ago by ▴ 10
0
votes
2
replies
2.7k
views
OpenCyto -- proper gating of CD45
opencyto gating flowworkspace
updated 8.8 years ago by ★ 1.3k • written 8.8 years ago by ▴ 30
0
votes
1
reply
2.6k
views
reading an ".xml" file as FlowJo Workspace file
opencyto gating opencyto flowcore flowworkspace
updated 8.8 years ago by ★ 1.3k • written 8.8 years ago by • 0
0
votes
1
reply
1.2k
views
exporting bi-exponetially transformed data as CVS
flowWorkspace flowcore
updated 8.1 years ago by ★ 1.3k • written 8.1 years ago by ▴ 10
0
votes
5
replies
1.8k
views
getIndices identifies non existing cells in a gate
flowworkspace getIndices
updated 8.0 years ago by ★ 1.3k • written 8.0 years ago by • 0
0
votes
1
reply
886
views
How to adjust plotGate axis?
flowworkspace
7.6 years ago justinyi10 ▴ 10
0
votes
4
replies
2.3k
views
Trying to plot MFI using Flowworkspace but parameters are transformed by 'flowjo_biexp'. How do I get untransformed values?
flowworkspace
updated 6.7 years ago by ★ 1.3k • written 6.7 years ago by • 0
0
votes
1
reply
1.1k
views
How to get popStats from wsp
flowworkspace
updated 6.2 years ago by ★ 1.3k • written 6.2 years ago by ▴ 10
0
votes
0
replies
974
views
Job: Post-Doctoral Bioinformatics Research Scientist / Bioinformatician II
flowWorkspace CytoGLMM FlowSOM
3.2 years ago hbolouri • 0
0
votes
1
reply
1.2k
views
Getting a dataset that only contains the flow data within the gated area
flowWorkspace
updated 3.4 years ago by ★ 1.3k • written 3.4 years ago by • 0
0
votes
1
reply
1.9k
views
how to get MFI stats from data
flowCore flowStats flowUtils flowWorkspace
updated 3.4 years ago by ★ 1.3k • written 3.8 years ago by • 0
0
votes
2
replies
521
views
arm64 Update to flowWorkspace (4.14.2)
flowWorkspace
11 months ago rgong1 • 0
0
votes
1
reply
1.5k
views
flowWorkspace transformation on FCS 3 data (Nikolas)
PROcess flowWorkspace PROcess flowWorkspace
updated 12.8 years ago by ▴ 30 • written 12.8 years ago by ▴ 240
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Comment: MEDIPS - error using MEDIPS.CpGenrich by sg • 0
I have the same error when I use 22 chrs with the paramenters chr.select: Error in h(simpleError(msg, call)) : error in evaluating the …
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https://www.bioconductor.org/packages/release/BiocViews.html#___BiologicalQuestion
Comment: GSVA on RNAseq data by Robert Castelo ★ 3.4k
Hi Bob, I have not investigated whether a particular unit of expression works better than others, but using logTPM or logCPM units of expr…
Answer: Store Matrix in DataFrame Cell by James W. MacDonald 68k
Put it in a list and put the list in a column.
Comment: For some reason I can't update BiocManager to 3.20 by James W. MacDonald 68k
Please post output from starting R and then running `sessionInfo()` (as requested by the web form you use to post questions). I get ``` > …
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Overcoming confounding in batch effect correction
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
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