Bioconductor Flowcore

Showing : flowcore • reset

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105

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FlowCytometry flowWorkspace flowCore

5 weeks ago taylor.witte • 0

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240

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flowWorkspace flowCore CytoML

updated 4 weeks ago by SamGG ▴ 350 • written 9 weeks ago by jarod ▴ 30

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211

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flowDensity flowCore

3 months ago info ▴ 10

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875

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read.FCS flowCore

updated 4 months ago by SamGG ▴ 350 • written 4 months ago by das.traveller • 0

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359

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flowCore

updated 4 months ago by James W. MacDonald 65k • written 4 months ago by Gabriel ▴ 10

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414

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Partec read.FCS flowCore

5 months ago mrescan • 0

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371

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flowCore cytoMEM

9 months ago aguirre ▴ 20

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496

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Source flowCore Repository git

updated 12 months ago by shepherl 3.8k • written 12 months ago by dominic.r • 0

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1.6k

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ncdfFlow flowCore

updated 7 months ago by osayou • 0 • written 3.5 years ago by anders.tondell ▴ 30

9 results • Page 1 of 1

Recent ...

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Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…

Comment: PCA plot suggestions by JKim • 0

cross post: https://www.biostars.org/p/9593486/

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…

Votes

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0