Bioconductor Flowcore

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flowWorkspace flowCore CytoML

updated 23 days ago by SamGG ▴ 350 • written 8 weeks ago by jarod ▴ 30

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345

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flowCore

updated 4 months ago by James W. MacDonald 65k • written 4 months ago by Gabriel ▴ 10

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364

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flowCore cytoMEM

9 months ago aguirre ▴ 20

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487

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Source flowCore Repository git

updated 11 months ago by shepherl 3.8k • written 11 months ago by dominic.r • 0

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196

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flowDensity flowCore

3 months ago info ▴ 10

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406

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Partec read.FCS flowCore

5 months ago mrescan • 0

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1.6k

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ncdfFlow flowCore

updated 7 months ago by osayou • 0 • written 3.5 years ago by anders.tondell ▴ 30

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FlowCytometry flowWorkspace flowCore

29 days ago taylor.witte • 0

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853

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read.FCS flowCore

updated 4 months ago by SamGG ▴ 350 • written 4 months ago by das.traveller • 0

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Comment: Differential peaks that were not identified in diffbind were identified in diseq by ATpoint ★ 4.0k

Make an MAplot. There is almost certainly an issue with normalization here given the very biased distribution of logFCs as in this Volcano.

Comment: significant difference of p-values with dream() after updating VariancePartition by gabriel.hoffman ▴ 100

See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…

Comment: A ComBat-seq issue: the covariates are confounded by W. Evan Johnson ▴ 850

This is only partially confounded because there is overlap between the batches -- they both have GFP controls that can be used to remove ba…

Answer: Different number of exons in reference genome affects DEXSeq analysis by Alejandro Reyes ★ 1.9k

Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…

Answer: Adding columns to DEXSeqResults object by Alejandro Reyes ★ 1.9k

I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…

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Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

A: Using GRanges and IRanges to simply get all chromosome data

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