Showing : flowcytometry • reset
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spillover::flowCore problem: Error in match(unstained, sampleNames(x))
flowcore spillover flowcytometry
updated 6.2 years ago by • 0 • written 8.1 years ago by • 0
0
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1
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1.3k
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samples are reordered in read.flowSet
flowcore flowcytometry
8.7 years ago Jiang, Mike ★ 1.3k
1
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2
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1.2k
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openCyto - samples with low cell counts
flowcytometry opencyto
8.3 years ago Jiang, Mike ★ 1.3k
1
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1
reply
1.5k
views
flowCore: using read.FCS with which.lines is not time efficient?
flowcore read.FCS flowcytometry
updated 9.3 years ago by ★ 1.3k • written 9.5 years ago by ▴ 10
0
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1
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1.2k
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FlowViz package question
flowviz flowcytometry
8.1 years ago Jiang, Mike ★ 1.3k
1
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1
reply
603
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creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
FlowCytometry Opencyto
updated 18 months ago by ★ 3.9k • written 18 months ago by • 0
2
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1
reply
878
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How to modify a compensation matrix in an fcs file
flowCore FlowCytometry
17 months ago aguirre ▴ 20
0
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1
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1.8k
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FlowWorkspace and norm2Filter
flowcytometry opencyto flowworkspace flowcore
8.1 years ago Jiang, Mike ★ 1.3k
2
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9
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1.4k
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Error when plotting flow cytometry data
FlowCytometry flowCore ggcyto
updated 19 months ago by ▴ 350 • written 19 months ago by • 0
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2
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2.0k
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Scaling fcs files with flowCore
flowCore flowcytometry
8.1 years ago Jiang, Mike ★ 1.3k
0
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1
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1.1k
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[flowCore] linearization of logarithmic data seems to be calculated wrong
flowcore flowcytometry
updated 6.2 years ago by ★ 1.3k • written 6.2 years ago by • 0
0
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2
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1.9k
views
xyplot can't find channel (flowViz)
flowcore flowviz flowcytometry
updated 8.8 years ago by ★ 1.3k • written 8.8 years ago by • 0
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0
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1.2k
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FlowCore - reading in flowSets
FlowCytometry PROcess flowCore FlowCytometry PROcess flowCore
11.2 years ago Pieter Coussement ▴ 30
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104
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Macsquant FCS in read.FCS & opencyto
FlowCytometry flowWorkspace flowCore
4 weeks ago taylor.witte • 0
4
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1
reply
1.7k
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News: New Flow Cytometry Data Analysis Framework
flowcore flowcytometry opencyto new News
9.6 years ago Greg Finak ▴ 150
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0
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1.3k
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Re: FlowStats help
flowclust opencyto flowcytometry
9.1 years ago Jiang, Mike ★ 1.3k
0
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1
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1.4k
views
read.flowSet error Error: vector::_M_range_check
software error read.flowset() read.fcs flowcore flowcytometry
8.2 years ago e.bestion • 0
0
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1
reply
1.2k
views
Installation of "flowWorkspace" on Ubuntu fails
bioconductor R flowcytometry
7.2 years ago mo • 0
0
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1
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1.1k
views
[flowSOM] extracting data from tree
flowcytometry flowSOM flowSET flowFrame
5.0 years ago fabrizio.benedetti.82 • 0
0
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0
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541
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How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
17 months ago Dennis.hinkel • 0
0
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0
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341
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Merging 2 staining panels
FlowCytometry flowCore
14 months ago michaela.gregorova13 • 0
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0
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679
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Job: Bioconductor developer
FlowCytometry flowCore
2.4 years ago markkelly1983 ▴ 20
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0
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253
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News: Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometryData FlowCytometry
4 months ago info ▴ 10
0
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0
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538
views
Reducing/sampling number of FCS events
FlowCytometry flowCore
2.3 years ago markkelly1983 ▴ 20
0
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0
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441
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gate_quad_sequential as parent gate for downstream gating in opencyto CSV template
opencyto FlowCytometry
18 months ago Noël • 0
25 results • Page 1 of 1
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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
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C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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