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flowcytometry
•
reset
0
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replies
192
views
News:
Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor
FlowCytometryData
FlowCytometry
12 weeks ago
info
▴ 10
0
votes
0
replies
312
views
Merging 2 staining panels
FlowCytometry
flowCore
12 months ago
michaela.gregorova13
• 0
2
votes
1
reply
796
views
How to modify a compensation matrix in an fcs file
flowCore
FlowCytometry
16 months ago
aguirre
▴ 20
0
votes
0
replies
506
views
How to fix Flow-Data autoplot heat map
FlowCytometry
flowCore
openCyto
ggcyto
16 months ago
Dennis.hinkel
• 0
1
vote
1
reply
559
views
creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
FlowCytometry
Opencyto
updated 17 months ago by
Kevin Blighe
★ 3.9k • written 17 months ago by
Noël
• 0
0
votes
0
replies
407
views
gate_quad_sequential as parent gate for downstream gating in opencyto CSV template
opencyto
FlowCytometry
17 months ago
Noël
• 0
2
votes
9
replies
1.3k
views
Error when plotting flow cytometry data
FlowCytometry
flowCore
ggcyto
updated 18 months ago by
SamGG
▴ 330 • written 18 months ago by
alex
• 0
0
votes
0
replies
508
views
Reducing/sampling number of FCS events
FlowCytometry
flowCore
2.2 years ago
markkelly1983
▴ 20
0
votes
0
replies
651
views
Job:
Bioconductor developer
FlowCytometry
flowCore
2.3 years ago
markkelly1983
▴ 20
0
votes
1
reply
1.0k
views
[flowSOM] extracting data from tree
flowcytometry
flowSOM
flowSET
flowFrame
4.9 years ago
fabrizio.benedetti.82
• 0
0
votes
6
replies
2.0k
views
spillover::flowCore problem: Error in match(unstained, sampleNames(x))
flowcore
spillover
flowcytometry
updated 6.1 years ago by
Samuel Ahuno
• 0 • written 8.0 years ago by
Daniel Prieto
• 0
0
votes
1
reply
1.0k
views
[flowCore] linearization of logarithmic data seems to be calculated wrong
flowcore
flowcytometry
updated 6.1 years ago by
Jiang, Mike
★ 1.3k • written 6.1 years ago by
max.zhao
• 0
0
votes
1
reply
1.2k
views
Installation of "flowWorkspace" on Ubuntu fails
bioconductor
R
flowcytometry
7.1 years ago
mo
• 0
0
votes
2
replies
1.9k
views
Scaling fcs files with flowCore
flowCore
flowcytometry
8.0 years ago
Jiang, Mike
★ 1.3k
0
votes
1
reply
1.8k
views
FlowWorkspace and norm2Filter
flowcytometry
opencyto
flowworkspace
flowcore
8.0 years ago
Jiang, Mike
★ 1.3k
0
votes
1
reply
1.2k
views
FlowViz package question
flowviz
flowcytometry
8.0 years ago
Jiang, Mike
★ 1.3k
0
votes
1
reply
1.4k
views
read.flowSet error Error: vector::_M_range_check
software error
read.flowset()
read.fcs
flowcore
flowcytometry
8.1 years ago
e.bestion
• 0
1
vote
2
replies
1.2k
views
openCyto - samples with low cell counts
flowcytometry
opencyto
8.2 years ago
Jiang, Mike
★ 1.3k
0
votes
1
reply
1.2k
views
samples are reordered in read.flowSet
flowcore
flowcytometry
8.6 years ago
Jiang, Mike
★ 1.3k
0
votes
2
replies
1.9k
views
xyplot can't find channel (flowViz)
flowcore
flowviz
flowcytometry
updated 8.7 years ago by
Jiang, Mike
★ 1.3k • written 8.7 years ago by
ericjkort
• 0
0
votes
0
replies
1.3k
views
Re: FlowStats help
flowclust
opencyto
flowcytometry
9.0 years ago
Jiang, Mike
★ 1.3k
1
vote
1
reply
1.5k
views
flowCore: using read.FCS with which.lines is not time efficient?
flowcore
read.FCS
flowcytometry
updated 9.2 years ago by
Jiang, Mike
★ 1.3k • written 9.4 years ago by
skiaphrene
▴ 10
4
votes
1
reply
1.6k
views
News:
New Flow Cytometry Data Analysis Framework
flowcore
flowcytometry
opencyto
new
News
9.5 years ago
Greg Finak
▴ 150
0
votes
0
replies
1.1k
views
FlowCore - reading in flowSets
FlowCytometry
PROcess
flowCore
FlowCytometry
PROcess
flowCore
11.1 years ago
Pieter Coussement
▴ 30
24 results • Page
1 of 1
Recent ...
Replies
Comment: DEG Filtering
by
Amit
• 0
Hello Gordon, The PCA plot for RMA normalized data shows Mixing of samples. Is it Batch Effect ? Because when I apply ARSyNseq() and again …
Comment: Unable to annotate ExpressionSet object from hugene11st chip
by
James W. MacDonald
65k
Let's take a closer look. ``` > library(GEOquery) ## some random data > getGEOSuppFiles("GSE193983") > setwd("GSE193983/") > untar("GSE19…
Comment: DEG Filtering
by
Gordon Smyth
50k
RMA normalization is good but batch correction using NOISeq isn't right. Data shouldn't be batch corrected before the limma analysis and NO…
Answer: maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicat
by
snijesh
▴ 20
You can try: using `read.delim` or `fread`. ``` my_maf = data.table::fread("path/to/maf/sample.maf") my_maf = read.maf(maf = my_maf) …
Comment: DEG Filtering
by
Amit
• 0
Hi Gordon, Thank you for your response and advice. I want to analyze Dataset GSE18090 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi) whic…
Votes
Comment: DEG Filtering
Answer: DEG Filtering
Answer: DEG Filtering
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: padj-based gradient scale from barplot (clusterProfiler results) does not work p
Awards
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James W. MacDonald
65k
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Gordon Smyth
50k
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rocanja
▴ 60
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Wolfgang RAFFELSBERGER
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