Showing : flowcytometry • reset
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Macsquant FCS in read.FCS & opencyto
FlowCytometry flowWorkspace flowCore
5 weeks ago taylor.witte • 0
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253
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News: Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometryData FlowCytometry
4 months ago info ▴ 10
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342
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Merging 2 staining panels
FlowCytometry flowCore
14 months ago michaela.gregorova13 • 0
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1
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879
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How to modify a compensation matrix in an fcs file
flowCore FlowCytometry
17 months ago aguirre ▴ 20
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543
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How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
17 months ago Dennis.hinkel • 0
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605
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creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
FlowCytometry Opencyto
updated 18 months ago by ★ 3.9k • written 18 months ago by • 0
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443
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gate_quad_sequential as parent gate for downstream gating in opencyto CSV template
opencyto FlowCytometry
18 months ago Noël • 0
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9
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1.4k
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Error when plotting flow cytometry data
FlowCytometry flowCore ggcyto
updated 19 months ago by ▴ 350 • written 19 months ago by • 0
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540
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Reducing/sampling number of FCS events
FlowCytometry flowCore
2.3 years ago markkelly1983 ▴ 20
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680
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Job: Bioconductor developer
FlowCytometry flowCore
2.4 years ago markkelly1983 ▴ 20
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1.1k
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[flowSOM] extracting data from tree
flowcytometry flowSOM flowSET flowFrame
5.0 years ago fabrizio.benedetti.82 • 0
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6
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2.1k
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spillover::flowCore problem: Error in match(unstained, sampleNames(x))
flowcore spillover flowcytometry
updated 6.2 years ago by • 0 • written 8.1 years ago by • 0
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1
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1.1k
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[flowCore] linearization of logarithmic data seems to be calculated wrong
flowcore flowcytometry
updated 6.2 years ago by ★ 1.3k • written 6.2 years ago by • 0
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1
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1.2k
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Installation of "flowWorkspace" on Ubuntu fails
bioconductor R flowcytometry
7.2 years ago mo • 0
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2
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2.0k
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Scaling fcs files with flowCore
flowCore flowcytometry
8.1 years ago Jiang, Mike ★ 1.3k
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1.8k
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FlowWorkspace and norm2Filter
flowcytometry opencyto flowworkspace flowcore
8.1 years ago Jiang, Mike ★ 1.3k
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1
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1.2k
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FlowViz package question
flowviz flowcytometry
8.1 years ago Jiang, Mike ★ 1.3k
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1
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1.4k
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read.flowSet error Error: vector::_M_range_check
software error read.flowset() read.fcs flowcore flowcytometry
8.2 years ago e.bestion • 0
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2
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1.2k
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openCyto - samples with low cell counts
flowcytometry opencyto
8.3 years ago Jiang, Mike ★ 1.3k
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1.3k
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samples are reordered in read.flowSet
flowcore flowcytometry
8.7 years ago Jiang, Mike ★ 1.3k
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2
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1.9k
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xyplot can't find channel (flowViz)
flowcore flowviz flowcytometry
updated 8.8 years ago by ★ 1.3k • written 8.8 years ago by • 0
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0
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1.3k
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Re: FlowStats help
flowclust opencyto flowcytometry
9.1 years ago Jiang, Mike ★ 1.3k
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1
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1.5k
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flowCore: using read.FCS with which.lines is not time efficient?
flowcore read.FCS flowcytometry
updated 9.3 years ago by ★ 1.3k • written 9.5 years ago by ▴ 10
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1.7k
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News: New Flow Cytometry Data Analysis Framework
flowcore flowcytometry opencyto new News
9.6 years ago Greg Finak ▴ 150
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1.2k
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FlowCore - reading in flowSets
FlowCytometry PROcess flowCore FlowCytometry PROcess flowCore
11.2 years ago Pieter Coussement ▴ 30
25 results • Page 1 of 1
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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
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C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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