Bioconductor Flowdensity

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flowDensity

6 months ago fredrikwallberg • 0

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451

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flowDensity flowCore

9 months ago info ▴ 10

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749

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flowCore flowDensity

2.6 years ago nmchavez • 0

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1.4k

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flowdensity flowcore for loop

updated 5.8 years ago by Bioconductor Community 0 • written 5.9 years ago by beshea.jj • 0

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flowcore flow cytometry flowdensity hyperlog transformation

updated 6.1 years ago by Jiang, Mike ★ 1.3k • written 6.1 years ago by Joseph.Hanson • 0

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968

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flowDensity developers

updated 7.3 years ago by Martin Morgan 25k • written 7.3 years ago by mmalek • 0

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1.4k

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flowdensity flowviz

updated 8.6 years ago by Jiang, Mike ★ 1.3k • written 8.6 years ago by Ulrik Stervbo ▴ 30

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flowdensity

10.0 years ago rschmidt2 • 0

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1.9k

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flowClust openCyto flowDensity flowClust openCyto flowDensity

10.2 years ago Jiang, Mike ★ 1.3k

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flowClean flowDensity flowClean flowDensity

updated 10.3 years ago by Justin Meskas ▴ 60 • written 10.3 years ago by Kipper Fletez-Brant ▴ 150

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2.0k

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flowDensity flowDensity

updated 10.5 years ago by Josef Spidlen ▴ 140 • written 10.5 years ago by Raghu ▴ 20

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1.1k

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openCyto flowDensity openCyto flowDensity

10.5 years ago Jiang, Mike ★ 1.3k

12 results • Page 1 of 1

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Answer: Automatically generate contrasts from a model matrix / formula by Gordon Smyth 51k

I am very concerned that you are attempting to extract pairwise comparisons from an interaction formula like `0 + Group*Sex + Age`, because…

Comment: Mostly increased counts in differentially accessible peaks using DESeq2 by Ricardo Iván • 0

Hi Michael, Thanks for your reply. After reviewing the PCAs, maybe the issue that despite the replicates looking similar, there is still a…

Comment: Using Normalized Counts in DESeq2 by Michael Love 42k

Also, just to add, there are many dozens of posts on this topic of DESeq2 applied to TCGA counts, normalized or other. Recommend google sea…

Answer: Using Normalized Counts in DESeq2 by ATpoint ★ 4.5k

TCGA raw counts can be obtained for example using the TCGAbiolinks or recount packages.

Comment: How to reverse complement some elements of a DNAStringSet by Christine Jones • 0

Fantastic, thank you

Votes

Answer: When running contrasts, does it use normalized read counts?

Comment: featureCounts fails to load annotation file

Answer: How to reverse complement some elements of a DNAStringSet

Answer: KEGGgraph result difference

Answer: What should be the normalization protocol for RNA seq data for WGCNA?

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