Bioconductor Flowdensity

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flowDensity

13 months ago fredrikwallberg • 0

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630

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flowDensity flowCore

16 months ago info ▴ 10

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911

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flowCore flowDensity

3.1 years ago nmchavez • 0

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1.6k

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flowdensity flowcore for loop

updated 6.3 years ago by Bioconductor Community 0 • written 6.5 years ago by beshea.jj • 0

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1.4k

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flowcore flow cytometry flowdensity hyperlog transformation

updated 6.7 years ago by Jiang, Mike ★ 1.3k • written 6.7 years ago by Joseph.Hanson • 0

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1.1k

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flowDensity developers

updated 7.8 years ago by Martin Morgan 25k • written 7.8 years ago by mmalek • 0

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1.6k

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flowdensity flowviz

updated 9.2 years ago by Jiang, Mike ★ 1.3k • written 9.2 years ago by Ulrik Stervbo ▴ 30

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flowdensity

10.6 years ago rschmidt2 • 0

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2.0k

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flowClust openCyto flowDensity flowClust openCyto flowDensity

10.8 years ago Jiang, Mike ★ 1.3k

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1.5k

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flowClean flowDensity flowClean flowDensity

updated 10.9 years ago by Justin Meskas ▴ 60 • written 10.9 years ago by Kipper Fletez-Brant ▴ 150

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2.1k

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flowDensity flowDensity

updated 11.1 years ago by Josef Spidlen ▴ 140 • written 11.1 years ago by Raghu ▴ 20

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1.1k

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openCyto flowDensity openCyto flowDensity

11.1 years ago Jiang, Mike ★ 1.3k

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Comment: How to extract coordinates of mismatches from a BAM file lodaded in as a GAlignm by Charles • 0

I am trying this but it is slow. ``` aln2mismatches <- function (gal) { gr <- GRanges(gal) irl <- cigarRangesAlongReferenceSpace(cigar…

Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change by James W. MacDonald 68k

Yes, you can simply flip the sign of the logFC to reverse the direction of the comparison.

Comment: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

The argument for annotation_col is meant to be a `data.frame`, not a vector. The hint in the error is that it has the wrong number of dimen…

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

I used this argument in the second paragraph of code forthe heatmap, this is wehre I got the message Error in `[.default`(annotation_col, c…

Answer: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

Ah, yes. The non-ASCII character error. My favorite! Please note that `pheatmap` is not a Bioconductor package, so you should be asking …

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Comment: Heatmap of a transformed deseq object with pheatmap

DESeq2: Question about the alpha in summary() and results()

Comment: How to load scRNA-seq data from GEO

limma correction for tumor purity

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