Bioconductor Flowmerge

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flowmerge

7.1 years ago adlerj • 0

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flowmerge

7.1 years ago adlerj • 0

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flowmerge MFI

updated 8.2 years ago by Greg Finak ▴ 240 • written 8.4 years ago by veronikag • 0

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flowMerge flowMerge

10.5 years ago oscar Jottrand ▴ 10

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flowMerge flowMerge

updated 11.4 years ago by Kevin Schiesser ▴ 10 • written 11.4 years ago by Kevin Schiesser ▴ 40

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Cancer flowMerge Cancer flowMerge

12.9 years ago Greg Finak ▴ 240

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Cancer flowMerge Cancer flowMerge

updated 12.9 years ago by Greg Finak ▴ 150 • written 12.9 years ago by Greg Finak ▴ 240

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Cancer flowMerge iFlow Cancer flowMerge iFlow

14.2 years ago Josef Spidlen ▴ 140

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flowMerge iFlow flowMerge iFlow

updated 14.2 years ago by Vincent J. Carey, Jr. 6.7k • written 14.2 years ago by Philipp Meng ▴ 20

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Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

How am i making the data? I am using the DESeq2 output data which I had generated

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k

Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …

Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Votes

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

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