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flowpeaks
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extracting cluster data after using flowpeaks
flowpeaks
6.8 years ago
shadhiksk
• 0
0
votes
2
replies
1.4k
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Subsetting clusters in flowPeaks
flowCore
flowViz
flowPeaks
flowCore
flowViz
flowPeaks
updated 6.8 years ago by
shadhiksk
• 0 • written 9.8 years ago by
Hefin Rhys Jones
▴ 30
1
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2
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1.2k
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flowPeaks error - data length problem
flowPeaks
as.vector(data)
9.4 years ago
AJC
▴ 10
0
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1
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4.2k
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flowPeaks - plot.new() error due to too many graphs in one R Graphics window
flowpeaks
plot
updated 9.2 years ago by
James W. MacDonald
65k • written 9.2 years ago by
AJC
▴ 10
0
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0
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672
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Problem while doing flowpeaks clustering
flowpeaks
6.8 years ago
shadhiksk
• 0
0
votes
0
replies
535
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Print error rate in shiny App
flowpeaks
6.1 years ago
markvandijk81
• 0
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Answer: OrgDb for maize
by
James W. MacDonald
65k
``` > library(AnnotationHub) > hub <- AnnotationHub() |===========================| 100% snapshotDate(): 2023-10-23 > query(hu…
Comment: Which input file is used for DGEList in EgdeR?
by
i.atanasoai
• 0
Understood, Thank you very much for the reply, very kind.
Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…
Comment: DEG with low counts
by
Michael Love
41k
These counts are too low, only a few samples above a count of 10. So for typical RNA-seq data that is underpowered to call differences. It…
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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