Showing : flowsom • reset
0
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2
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421
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FlowSOM library requires igraph but igraph does not install
FlowSOM
written 7 months ago by • 0
0
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2
replies
750
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FlowSOM error system.file()
FlowSOM
updated 16 months ago by ▴ 360 • written 16 months ago by • 0
0
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0
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533
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Identifying populations within a FlowSOM tree
FlowSOM
16 months ago agus_rizzo • 0
1
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3
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1.1k
views
FlowSOM Error in flowCore::read.FCS
FlowSOM
updated 16 months ago by ▴ 360 • written 16 months ago by • 0
1
vote
1
reply
788
views
FlowSOM with unrelated channels
FlowSOM cytofWorkflow
updated 24 months ago by ▴ 70 • written 24 months ago by • 0
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0
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1.0k
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Job: Post-Doctoral Bioinformatics Research Scientist / Bioinformatician II
flowWorkspace CytoGLMM FlowSOM
3.3 years ago hbolouri • 0
0
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2
replies
1.1k
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FlowSOM dependencies - cytoML and flowutils
FlowSOM
3.4 years ago jakub.savara • 0
0
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0
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1.2k
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Help with FlowSOM
FlowSOM
3.7 years ago ismail.ameran • 0
1
vote
6
replies
2.1k
views
Running FlowSOM in R problem
FlowSOM
updated 4.4 years ago by ▴ 10 • written 4.4 years ago by • 0
0
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0
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1.7k
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Error from FlowSom to Cytofast
Cytofast FlowSom CyTOF fcs files
4.4 years ago domenico.somma • 0
0
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1
reply
1.3k
views
[flowSOM] extracting data from tree
flowcytometry flowSOM flowSET flowFrame
5.9 years ago fabrizio.benedetti.82 • 0
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0
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1.7k
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FlowSOM and ConsensusClusterPlus: reproducibility issue
flowsom consensusclusterplus
8.0 years ago Lukas Weber • 0
0
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1
reply
1.3k
views
multiple errors in flowSOM- with readinput and metaClustering_consensus
flowcore flowsom
8.6 years ago jeremyeadler • 0
13 results • Page 1 of 1
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Comment: Issue with DECIPHER::IdTaxa by Daniel • 0
The issue is still there and it is a real pain. ape and ade4 are used by packages like Phyloseq. There should be a way to avoid these inc…
Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Gordon Smyth 52k
I generally recommend `block=individual` for unbalanced designs, to recover information from incomplete blocks. I would only be disuaded fr…
Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Devin ▴ 10
Thank you, Gordon, for your responses to all of my questions. For analysis A), in the case when a patient has either a missing timepoint or…
Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0
Thanks Michael. Just out of curiosity, would you also use the same technique for things like clustering analysis or when looking at the abn…
Comment: GAGE kegg.gsets() self-signed certificate error by Lucas • 0
Hello, I ended up solving the issue by using the first strategy: Disable the SSL certificate Verification. I used the following code to …
Votes
Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
Answer: Using TPM from tximport of Salmon output for singscore
Comment: Using TPM from tximport of Salmon output for singscore
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