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fluidigm
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Combine scRNAseq data for bulk analysis using DESeq2
DESeq2
scRNAseq
Fluidigm
18 months ago
evocanres
• 0
0
votes
1
reply
1.2k
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Fluidigm data analysis - how to get adj p-values for 96 genes
fluidigm
wilcoxon signed rank test
t.test
adj.p.value
normal distribution
updated 8.0 years ago by
Gordon Smyth
50k • written 8.0 years ago by
dk364
• 0
0
votes
1
reply
1.0k
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Normalization and batch effect adjustment of fluidgm pcr data to be analyzed with Limma
fluidigm
normalization
limma
pcr
updated 7.3 years ago by
Gordon Smyth
50k • written 7.3 years ago by
raf4
▴ 20
0
votes
0
replies
808
views
HTqPCR for Fluidigm Results
htqpcr
fluidigm
6.2 years ago
rhonce
• 0
0
votes
0
replies
898
views
Import problem with HTqPCR Fluidigm 96.96
htqpcr
bioconductor
fluidigm
biomark
6.1 years ago
reed27
• 0
0
votes
1
reply
512
views
Limma for Fluidigm high throughput PCR
limma
Limma
Fluidigm
updated 13 months ago by
Gordon Smyth
50k • written 13 months ago by
jms2520
▴ 10
6 results • Page
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Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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