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foldchange
•
reset
1
vote
2
replies
365
views
How to perform longitudinal analysis using EdgeR
StatisticalMethod
FoldChange
edgeR
RNASeq
3 months ago
Sabiha
▴ 20
1
vote
1
reply
2.0k
views
Question regarding lfcShrink types in DiffBind
FoldChange
DiffBind
lfcShrink
updated 8 months ago by
Rory Stark
★ 5.1k • written 8 months ago by
bhandary.8590
▴ 20
4
votes
4
replies
743
views
DESeq2 lfcShrink function used in DiffBind package
FoldChange
DiffBind
lfcShrink
Cut&TagData
9 months ago
bhandary.8590
▴ 20
0
votes
2
replies
1.5k
views
DESeq2 Log2 fold change does not make sense given change in TPM
DESeq2
TPM
Foldchange
updated 24 months ago by
Michael Love
41k • written 24 months ago by
dadca596
• 0
0
votes
1
reply
860
views
First time Statistical Analysis of RNA-seq
edgeR
RNA-Seq
log2
foldchange
q_value
updated 2.2 years ago by
Gordon Smyth
50k • written 2.2 years ago by
johndavidgriner74
• 0
0
votes
2
replies
1.1k
views
sigh of log2FC values in DESeq2
sign
FoldChange
DESeq2
reference
updated 2.2 years ago by
Michael Love
41k • written 2.2 years ago by
yampolsk
• 0
3
votes
5
replies
4.5k
views
How does edgeR calculate fold change?
DifferentialExpression
DEA
FC
FoldChange
edgeR
2.6 years ago
zhxiaokang
▴ 20
2
votes
9
replies
2.2k
views
extract fold change of a list of gene from EdgeR?
EdgeR
RNAseq
Foldchange
updated 2.7 years ago by
swbarnes2
★ 1.3k • written 2.7 years ago by
najib
• 0
0
votes
7
replies
2.2k
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange
topGO
DifferentialExpression
enrichment
updated 3.4 years ago by
Gordon Smyth
50k • written 3.4 years ago by
lessismore
▴ 20
4
votes
5
replies
1.3k
views
All genes display positive fold change in topTable results after limma
limma
microarray
foldchange
DEG
GEO
updated 4.1 years ago by
Gordon Smyth
50k • written 4.1 years ago by
Pietro
▴ 40
1
vote
1
reply
1.3k
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 4.9 years ago by
Michael Love
41k • written 5.2 years ago by
fiona.dick91
▴ 60
5
votes
4
replies
1.4k
views
Foldchange values Limma
limma
RNAseq
foldchange
5.1 years ago • updated 5.0 years ago
susana.amaral.teixeira
▴ 20
12 results • Page
1 of 1
Recent ...
Replies
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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50k
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