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fourCseq
•
reset
1
vote
10
replies
2.1k
views
FourC object from scratch
hi-c
HiTC
fourcseq
8.5 years ago • updated 8.4 years ago
Nicolas Servant
▴ 260
2
votes
4
replies
2.2k
views
FourCSeq - how many bases to trim with countFragmentOverlaps
fourcseq
updated 8.0 years ago by
felix.klein
▴ 150 • written 8.6 years ago by
francesc.lopez
• 0
4
votes
27
replies
3.7k
views
FourCseq - error countFragmentOverlaps()
FourCseq
fourcseq
updated 8.9 years ago by
ericaenjoy3
• 0 • written 8.9 years ago by
Theo
▴ 10
0
votes
7
replies
2.0k
views
FourCseq -problem with countFragmentOverlaps
FourCseq
updated 8.8 years ago by
Hervé Pagès
16k • written 8.8 years ago by
dzis
• 0
0
votes
7
replies
2.5k
views
fourCseq - error getZscores
fourcseq
updated 8.3 years ago by
felix.klein
▴ 150 • written 8.4 years ago by
samuel collombet
▴ 140
0
votes
3
replies
1.1k
views
[FourCSeq] plotDifferences and plotZscores
fourcseq
7.9 years ago • updated 7.8 years ago
fidlay
• 0
3
votes
8
replies
1.7k
views
FourCSeq - how to write tables with the results
fourcseq
updated 5.4 years ago by
ferbecneu
• 0 • written 8.6 years ago by
francesc.lopez
• 0
2
votes
4
replies
1.4k
views
fourCseq - zscore distribution - trans interractions
fourCseq
updated 9.0 years ago by
Martin Morgan
25k • written 9.5 years ago by
samuel collombet
▴ 140
0
votes
4
replies
1.2k
views
fourCseq - getDifferences and normnalisation
fourcseq
updated 9.5 years ago by
felix.klein
▴ 150 • written 9.5 years ago by
samuel collombet
▴ 140
1
vote
8
replies
1.6k
views
FourCseq: getZScores errors, first case 6 digenerated cutterm second case 4 base cutter
fourcseq
7.8 years ago • updated 7.7 years ago
Theo
▴ 10
0
votes
3
replies
1.3k
views
Error in "getZScores()" while running FourCSeq package
fourcseq
8.1 years ago
MaddieS
• 0
0
votes
2
replies
935
views
FourCSeq - errors in plotZScores
fourcseq
updated 6.8 years ago by
Wolfgang Huber
★ 13k • written 6.8 years ago by
rustavo
• 0
0
votes
2
replies
870
views
plotZScores error in FourCSeq
fourCseq
8.0 years ago • updated 7.9 years ago
snowhune
• 0
0
votes
11
replies
1.8k
views
FourCseq - error ountFragmentOverlaps()
fourcseq
9.1 years ago
samuel collombet
▴ 140
0
votes
2
replies
872
views
FourCseq: mixed amount of replication/samples
fourcseq
7.8 years ago
Theo
▴ 10
0
votes
2
replies
1.1k
views
FourCSeq problem with getZScores
FourCSeq
updated 8.7 years ago by
felix.klein
▴ 150 • written 8.7 years ago by
a.chesi
• 0
0
votes
1
reply
1.0k
views
FourCSeq - getZScores & getDifferences function
fourcseq
updated 8.7 years ago by
felix.klein
▴ 150 • written 8.7 years ago by
mqbsszsy
• 0
0
votes
1
reply
877
views
FourCSeq - Significant changes between condition without replicate
fourcseq
updated 8.7 years ago by
Wolfgang Huber
★ 13k • written 8.7 years ago by
julienpontis
• 0
0
votes
1
reply
1.0k
views
FourCSeq problem with getZScores and multiple viewpoints
FourCSeq
getZScores
viewpoints
software error
8.4 years ago
dzis
• 0
0
votes
3
replies
1.1k
views
FourCSeq what is inverse-vst
fourcseq
updated 8.3 years ago by
felix.klein
▴ 150 • written 8.3 years ago by
sinhashruti
• 0
2
votes
2
replies
1.0k
views
FourCSeq- paired-end library ?
fourcseq
updated 8.0 years ago by
felix.klein
▴ 150 • written 8.0 years ago by
snowhune
• 0
0
votes
2
replies
921
views
FourCSeq- without replicates
fourcseq
updated 7.9 years ago by
felix.klein
▴ 150 • written 7.9 years ago by
tlgolan
• 0
0
votes
1
reply
848
views
FourCSeq - Significant Interaction
fourcseq
updated 8.7 years ago by
Wolfgang Huber
★ 13k • written 8.7 years ago by
julienpontis
• 0
0
votes
5
replies
1.1k
views
local fit and FourCseq
local fit
fourcseq
updated 7.8 years ago by
felix.klein
▴ 150 • written 7.8 years ago by
tlgolan
• 0
1
vote
1
reply
889
views
FourCseq- adding information manually
fourcseq
updated 7.8 years ago by
felix.klein
▴ 150 • written 7.8 years ago by
tlgolan
• 0
0
votes
1
reply
785
views
FourCSeq - data(fc) ?
FourCSeq
updated 8.7 years ago by
Wolfgang Huber
★ 13k • written 8.7 years ago by
julienpontis
• 0
0
votes
2
replies
995
views
FourCseq, rawRanges Description
fourcseq
updated 7.7 years ago by
felix.klein
▴ 150 • written 7.7 years ago by
Theo
▴ 10
1
vote
1
reply
703
views
FourCSeq Pipeline for Capture-C Data
fourcseq
updated 5.8 years ago by
felix.klein
▴ 150 • written 5.8 years ago by
mmackiewicz
• 0
0
votes
0
replies
770
views
FourCseq and local fit
fourcseq
7.8 years ago
tlgolan
• 0
0
votes
0
replies
1.2k
views
FourC object from scratch
hic-c
hitc
fourcseq
8.5 years ago
Nicolas Servant
▴ 260
0
votes
0
replies
704
views
FourCSeq: Error in getZScores
fourcseq
getzscores
6.0 years ago
Gustavo Ruiz
• 0
0
votes
0
replies
530
views
FourCseq extraction of fragments
fourcseq
5.5 years ago
ferbecneu
• 0
32 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
How am i making the data? I am using the DESeq2 output data which I had generated
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
by
Michael Love
41k
Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …
Answer: Citation for edgeR user guide
by
Gordon Smyth
50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class?
by
James W. MacDonald
65k
What do you mean by 'the information'? Do you have things in particular that you want?
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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