Biostar Frma

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affy rma frma oligo

updated 2.5 years ago by James W. MacDonald 59k • written 2.5 years ago by chziy429 • 0

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769

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frma expr gene expression data affy

updated 4.0 years ago by James W. MacDonald 59k • written 4.0 years ago by osieman52 • 0

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504

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frma frmatools

updated 4.1 years ago by Matthew McCall ▴ 830 • written 4.1 years ago by skol • 0

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1.5k

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readaffy frma affy package installation hgu133a

4.2 years ago Chris Mancuso • 0

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865

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frma barcode geneexpression gsm ncbi geo

updated 4.5 years ago by Matthew McCall ▴ 830 • written 4.5 years ago by diana.elassal • 0

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752

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frma affymetrix mouse gene arrays

updated 5.0 years ago by Matthew McCall ▴ 830 • written 5.0 years ago by arisarkar88 • 0

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884

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microarray frma

updated 4.2 years ago by emacreamoinn • 0 • written 5.0 years ago by aritra • 0

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frma normalization preprocessing

updated 5.4 years ago by Matthew McCall ▴ 830 • written 5.4 years ago by ctruntzer ▴ 20

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summarization FRMA affy

updated 5.6 years ago by James W. MacDonald 59k • written 5.6 years ago by Shamim Sarhadi ▴ 20

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frma frmatools affy

updated 5.6 years ago by Matthew McCall ▴ 830 • written 5.6 years ago by yesitsjess • 0

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frma frmatools affymetrix microarrays

6.2 years ago jperezrogers • 0

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993

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frma affymetrix barcode

updated 6.3 years ago by Matthew McCall ▴ 830 • written 6.3 years ago by minnie • 0

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frma microarray affiymetrix

6.3 years ago Matthias Z. ▴ 20

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oligo customcdf HTA frma

updated 6.7 years ago by James W. MacDonald 59k • written 6.7 years ago by sanj ▴ 20

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software error frma

updated 6.7 years ago by Matthew McCall ▴ 830 • written 6.7 years ago by Thomas Pfau ▴ 20

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frma bioconductor batcheffect Primeview insilicomerging

updated 7.1 years ago by Matthew McCall ▴ 830 • written 7.1 years ago by svlachavas ▴ 780

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952

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frma frmatools

updated 7.3 years ago by Matthew McCall ▴ 830 • written 7.3 years ago by Ryan C. Thompson 7.8k

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frma frmatools

updated 7.3 years ago by Matthew McCall ▴ 830 • written 7.3 years ago by Ryan C. Thompson 7.8k

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845

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annotation frma frmatools

updated 7.4 years ago by Matthew McCall ▴ 830 • written 7.4 years ago by Tim Triche ★ 4.2k

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frma

updated 7.7 years ago by Matthew McCall ▴ 830 • written 7.7 years ago by Guest User ★ 12k

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affy frma SCAN.UPC affy frma SCAN.UPC

updated 7.7 years ago by Ryan C. Thompson 7.8k • written 7.7 years ago by Guest User ★ 12k

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GO cdf frma BRAIN GO cdf frma BRAIN

updated 7.8 years ago by Matthew McCall ▴ 830 • written 7.8 years ago by Guest User ★ 12k

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Normalization affy PROcess GEOquery frma Normalization affy PROcess GEOquery frma

updated 7.8 years ago by Sean Davis 21k • written 7.8 years ago by Abhishek Pratap ▴ 170

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807

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GO probe PROcess frma GO probe PROcess frma

7.9 years ago Matthew McCall ▴ 830

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2.2k

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probe affy convert frma probe affy convert frma

updated 7.9 years ago by Peter Langfelder ★ 2.6k • written 7.9 years ago by Abhishek Pratap ▴ 170

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1.1k

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GO probe frma GO probe frma

updated 8.1 years ago by Matthew McCall ▴ 830 • written 8.1 years ago by Cornwell, Adam ▴ 110

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875

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GO probe frma GO probe frma

updated 8.2 years ago by Matthew McCall ▴ 830 • written 8.2 years ago by Cornwell, Adam ▴ 110

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1.5k

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Microarray probe oligo frma Microarray probe oligo frma

updated 8.3 years ago by Matthew McCall ▴ 830 • written 8.3 years ago by maria ▴ 10

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1.6k

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cdf affy PROcess oligo xps frma cdf affy PROcess oligo xps frma

updated 8.3 years ago by Stephen Piccolo ▴ 580 • written 8.3 years ago by Ty Thomson ▴ 100

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892

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probe frma probe frma

8.4 years ago Eric Zollars ▴ 30

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745

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probe frma probe frma

updated 8.4 years ago by James W. MacDonald 59k • written 8.4 years ago by Eric Zollars ▴ 30

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797

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frma frma

updated 8.5 years ago by Matthew McCall ▴ 830 • written 8.5 years ago by Raquel Martinez Garcia ▴ 50

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1.1k

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RNASeq qPCR affy oligo frma RNASeq qPCR affy oligo frma

updated 8.5 years ago by Stephen Piccolo ▴ 580 • written 8.5 years ago by Tim Triche ★ 4.2k

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3.6k

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Microarray Normalization probe affy frma Microarray Normalization probe affy frma

updated 8.6 years ago by francesco.brundu@gmail.com ▴ 40 • written 8.6 years ago by W. Evan Johnson ▴ 840

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720

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PROcess frma PROcess frma

updated 8.6 years ago by Loraine, Ann ▴ 50 • written 8.6 years ago by Matthew McCall ▴ 830

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1.1k

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Normalization frma Normalization frma

updated 8.7 years ago by Wolfgang Huber 13k • written 8.7 years ago by Guest User ★ 12k

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746

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affxparser frma GenomicRanges affxparser frma GenomicRanges

8.8 years ago Hanyine ▴ 30

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1.0k

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affxparser frma GenomicRanges affxparser frma GenomicRanges

8.8 years ago Li Liu ▴ 100

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819

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Microarray probe frma frmaTools Microarray probe frma frmaTools

updated 9.0 years ago by Matthew McCall ▴ 830 • written 9.0 years ago by Tae-Hoon Chung ▴ 70

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781

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frma SCAN.UPC frma SCAN.UPC

updated 9.0 years ago by Matthew McCall ▴ 830 • written 9.0 years ago by S.D. Chorlton ▴ 10

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683

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Microarray Normalization Preprocessing probe affy preprocessCore frma Microarray probe

9.1 years ago Matthew McCall ▴ 830

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775

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affy oligo frma ASSIGN affy oligo frma ASSIGN

updated 9.1 years ago by Matthew McCall ▴ 830 • written 9.1 years ago by Kamila Naxerova ▴ 100

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1.1k

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cdf frma frmaTools cdf frma frmaTools

updated 9.1 years ago by Stephen Piccolo ▴ 580 • written 9.2 years ago by Guest User ★ 12k

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1.2k

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Normalization cdf frma Normalization cdf frma

updated 9.3 years ago by Matthew McCall ▴ 830 • written 9.4 years ago by Cornwell, Adam ▴ 110

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811

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Annotation simpleaffy oligo GenomeGraphs frma Annotation simpleaffy oligo GenomeGraphs

9.5 years ago Jeremy Ng ▴ 180

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1.0k

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Microarray Annotation Normalization affy PROcess safe frma frmaTools Microarray affy

updated 9.5 years ago by Benilton Carvalho ★ 4.3k • written 9.5 years ago by wrighth ▴ 260

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812

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affy frma SCAN.UPC affy frma SCAN.UPC

updated 9.5 years ago by Stephen Piccolo ▴ 580 • written 9.5 years ago by W. Evan Johnson ▴ 840

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958

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Microarray Normalization affy PROcess safe frma Microarray Normalization affy PROcess

updated 9.6 years ago by Matthew McCall ▴ 830 • written 9.6 years ago by wrighth ▴ 260

votes

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864

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Normalization affy frma Normalization affy frma

updated 9.6 years ago by Stephen Piccolo ▴ 580 • written 9.6 years ago by W. Evan Johnson ▴ 840

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2.2k

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Normalization probe oligo frma frmaTools Normalization probe oligo frma frmaTools

9.8 years ago Schott, Johanna ▴ 20

50 results • Page 1 of 1

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Comment: Quantile Normalization after rma or not? by Yang Shi • 0

Thanks you so much sir! But I'm still confused with the boxplot showing here. Why oligo::rma could not get the plot like limma::normalizeBe…

Answer: how to understand cpm=1 and how filterByExpr works? by gowthamee • 0

I found the following two articles very helpful in explaining the functions "cpm" and "filterByExpr" Article#1: From reads to genes to pat…

Comment: different results in DESeq2 when comparing groups in two ways by zohreh.fazelan • 0

Thank you for your response. But I have few comparisons in which there are more significantly expressed genes in the socond way compared to…

Comment: lmFit, continuous exposure, adjustment covariates by Gordon Smyth 45k

Your code `t(dat[43:ncol(dat)]` is not even syntactically correct. It could not possibly run in R. You need to create an expression matrix…

Comment: Handling of missing values in limma by Gordon Smyth 45k

limma uses all the observations. There's nothing complicated about it. limma does not remove any persons from the analysis. I did not tel…

Votes

A: redundant probe sets in Affymetrix HG-U219

Answer: Quantile Normalization after rma or not?

Answer: Using featureCounts and downloading Rsubread

Answer: different results in DESeq2 when comparing groups in two ways

Awards • All

Scholar to James W. MacDonald 59k