Showing : frma • reset
7
votes
6
replies
4.6k
views
How to use brainarray custom cdf with oligo package?
oligo customcdf HTA frma
updated 6.6 years ago by 59k • written 6.7 years ago by ▴ 20
4
votes
5
replies
767
views
fRMA results different for Windows and Linux
frma expr gene expression data affy
updated 4.0 years ago by 59k • written 4.0 years ago by • 0
3
votes
1
reply
859
views
Processing several GSM from GEO database using Barcode and fRMA
frma barcode geneexpression gsm ncbi geo
updated 4.5 years ago by ▴ 830 • written 4.5 years ago by • 0
3
votes
9
replies
1.1k
views
About the best use of frma for several GEO Series
frma normalization preprocessing
updated 5.4 years ago by ▴ 830 • written 5.4 years ago by ▴ 20
2
votes
8
replies
1.6k
views
frma vectors for GPL13158 (Affymetrix HT HG-U133+ PM Array Plate)?
frma frmatools
updated 7.3 years ago by ▴ 830 • written 7.3 years ago by 7.8k
2
votes
3
replies
1.5k
views
hgu133plus2hsentrezgcdf or hgu133ahsentrezgcdf packages not installing
readaffy frma affy package installation hgu133a
4.2 years ago Chris Mancuso • 0
2
votes
5
replies
1.2k
views
fRMA: Applying mouse4302frmavecs on HT_MG-430_PM Arrays
frma microarray affiymetrix
6.3 years ago Matthias Z. ▴ 20
2
votes
2
replies
950
views
Strategies for fRMA on custom dataset(s)?
frma frmatools
updated 7.3 years ago by ▴ 830 • written 7.3 years ago by 7.8k
1
vote
3
replies
1.0k
views
Problem with frma median_polish
software error frma
updated 6.6 years ago by ▴ 830 • written 6.7 years ago by ▴ 20
1
vote
4
replies
713
views
Summarization probe ID to gene : FRMA
summarization FRMA affy
updated 5.6 years ago by 59k • written 5.6 years ago by ▴ 20
1
vote
5
replies
1.2k
views
Appropriate merge of batches of the same array to create a final total ExpressionSet
frma bioconductor batcheffect Primeview insilicomerging
updated 7.1 years ago by ▴ 830 • written 7.1 years ago by ▴ 780
0
votes
1
reply
814
views
FrozenRMA how to
Microarray Network hgu133plus2 Biobase PROcess KEGGSOAP beadarray EBImage edgeR frma
updated 10.2 years ago by ▴ 830 • written 10.2 years ago by ▴ 20
0
votes
4
replies
977
views
errors in FRMA
Annotation hgu133a2 hgu133a frma Annotation hgu133a2 hgu133a frma
updated 10.1 years ago by ▴ 830 • written 10.1 years ago by ▴ 510
0
votes
1
reply
827
views
Seperate quantile normalization but common probe summary by median polish (oligo package)?
Normalization probe frma frmaTools Normalization probe frma frmaTools
updated 9.8 years ago by 59k • written 9.8 years ago by ★ 12k
0
votes
0
replies
2.2k
views
Seperate quantile normalization but common probe summary by median polish (oligo package)?
Normalization probe oligo frma frmaTools Normalization probe oligo frma frmaTools
9.8 years ago Schott, Johanna ▴ 20
0
votes
2
replies
862
views
New Bioconductor Package: SCAN.UPC
Normalization affy frma Normalization affy frma
updated 9.6 years ago by ▴ 580 • written 9.6 years ago by ▴ 840
0
votes
5
replies
956
views
frma for Nimblegen arrays?
Microarray Normalization affy PROcess safe frma Microarray Normalization affy PROcess
updated 9.5 years ago by ▴ 830 • written 9.5 years ago by ▴ 260
0
votes
1
reply
809
views
[combat] UPC availablility
affy frma SCAN.UPC affy frma SCAN.UPC
updated 9.5 years ago by ▴ 580 • written 9.5 years ago by ▴ 840
0
votes
2
replies
1.0k
views
frma for Nimblegen arrays?
Microarray Annotation Normalization affy PROcess safe frma frmaTools Microarray affy
updated 9.5 years ago by ★ 4.3k • written 9.5 years ago by ▴ 260
0
votes
0
replies
810
views
Issue with Genome Graphs
Annotation simpleaffy oligo GenomeGraphs frma Annotation simpleaffy oligo GenomeGraphs
9.5 years ago Jeremy Ng ▴ 180
0
votes
3
replies
1.2k
views
Using fRMA with "alternative" CDF files
Normalization cdf frma Normalization cdf frma
updated 9.3 years ago by ▴ 830 • written 9.4 years ago by ▴ 110
0
votes
6
replies
1.1k
views
barcode with custom CDF
cdf frma frmaTools cdf frma frmaTools
updated 9.1 years ago by ▴ 580 • written 9.1 years ago by ★ 12k
0
votes
1
reply
773
views
fRMA for Gene ST arrays
affy oligo frma ASSIGN affy oligo frma ASSIGN
updated 9.1 years ago by ▴ 830 • written 9.1 years ago by ▴ 100
0
votes
0
replies
682
views
Normalizing a dataset from GEO to suit a classifier trained on another dataset
Microarray Normalization Preprocessing probe affy preprocessCore frma Microarray probe
9.1 years ago Matthew McCall ▴ 830
0
votes
1
reply
780
views
fRMA without using ReadAffy()
frma SCAN.UPC frma SCAN.UPC
updated 9.0 years ago by ▴ 830 • written 9.0 years ago by ▴ 10
0
votes
1
reply
816
views
frmaTools library error :: makeVectorsAffyBatch() function
Microarray probe frma frmaTools Microarray probe frma frmaTools
updated 9.0 years ago by ▴ 830 • written 9.0 years ago by ▴ 70
0
votes
2
replies
1.1k
views
frma normalization and batch effects
Normalization frma Normalization frma
updated 8.7 years ago by 13k • written 8.7 years ago by ★ 12k
0
votes
2
replies
716
views
looking for data file for ATH1 (GPL198)
PROcess frma PROcess frma
updated 8.6 years ago by ▴ 50 • written 8.6 years ago by ▴ 830
0
votes
2
replies
3.6k
views
Normalization before ComBat
Microarray Normalization probe affy frma Microarray Normalization probe affy frma
updated 8.6 years ago by ▴ 40 • written 8.6 years ago by ▴ 840
0
votes
5
replies
1.1k
views
SCAN.UPC for Illumina arrays?
RNASeq qPCR affy oligo frma RNASeq qPCR affy oligo frma
updated 8.5 years ago by ▴ 580 • written 8.5 years ago by ★ 4.2k
0
votes
3
replies
742
views
Fwd: Annotation discrepancy
probe frma probe frma
updated 8.4 years ago by 59k • written 8.4 years ago by ▴ 30
0
votes
0
replies
887
views
Annotation discrepancy HT HGU 133+ PM chip
probe frma probe frma
8.4 years ago Eric Zollars ▴ 30
0
votes
9
replies
1.6k
views
using frma and brainarray cdf on exon arrays
cdf affy PROcess oligo xps frma cdf affy PROcess oligo xps frma
updated 8.3 years ago by ▴ 580 • written 8.3 years ago by ▴ 100
0
votes
1
reply
1.5k
views
fRMA for Gene ST arrays
Microarray probe oligo frma Microarray probe oligo frma
updated 8.3 years ago by ▴ 830 • written 8.3 years ago by ▴ 10
0
votes
1
reply
873
views
fRMA- more issues with custom CDFs
GO probe frma GO probe frma
updated 8.2 years ago by ▴ 830 • written 8.2 years ago by ▴ 110
0
votes
1
reply
1.1k
views
fRMA- more issues with custom CDFs
GO probe frma GO probe frma
updated 8.1 years ago by ▴ 830 • written 8.1 years ago by ▴ 110
0
votes
3
replies
915
views
GCRMA: feature request
GO Regression probe gcrma frma GO Regression probe gcrma frma
updated 11.3 years ago by ▴ 250 • written 11.3 years ago by ★ 3.2k
0
votes
6
replies
2.3k
views
processing Illumina HT12v4.0 expression data from GEO
Normalization affy PROcess GEOquery frma Normalization affy PROcess GEOquery frma
updated 7.8 years ago by 21k • written 7.8 years ago by ▴ 170
0
votes
5
replies
1.3k
views
Single sample normalization of single-channel Agilent microarrays
affy frma SCAN.UPC affy frma SCAN.UPC
updated 7.7 years ago by 7.8k • written 7.7 years ago by ★ 12k
0
votes
2
replies
1.1k
views
barcode support for other platforms
frma
updated 7.7 years ago by ▴ 830 • written 7.7 years ago by ★ 12k
0
votes
2
replies
843
views
How many arrays are "enough" for creating useful fRMA vectors?
annotation frma frmatools
updated 7.4 years ago by ▴ 830 • written 7.4 years ago by ★ 4.2k
0
votes
3
replies
989
views
frma: "mogene.2.0.stfrmavecs" availability?? - Gene Barcode 3.0
frma affymetrix barcode
updated 6.3 years ago by ▴ 830 • written 6.3 years ago by • 0
0
votes
0
replies
792
views
In the frmaTools package, how can I makeVectorsFeatureSet() output include probeVecCore like the pre-built vectors?
frma frmatools affymetrix microarrays
6.2 years ago jperezrogers • 0
0
votes
4
replies
1.1k
views
fRMA error - unable to create unique mapping
frma frmatools affy
updated 5.6 years ago by ▴ 830 • written 5.6 years ago by • 0
0
votes
5
replies
879
views
How to normalize mouse gene 1.0st arry using frma?
microarray frma
updated 4.2 years ago by • 0 • written 5.0 years ago by • 0
0
votes
3
replies
752
views
fRMA normalization for Mouse Gene 2.1 ST Array
frma affymetrix mouse gene arrays
updated 5.0 years ago by ▴ 830 • written 5.0 years ago by • 0
0
votes
2
replies
497
views
HG-U219 vectors for fRMA?
frma frmatools
updated 4.1 years ago by ▴ 830 • written 4.1 years ago by • 0
0
votes
2
replies
489
views
Ask for help on the preprocessing of GEO microarray data with Oligo and affy package
affy rma frma oligo
updated 2.5 years ago by 59k • written 2.5 years ago by • 0
0
votes
6
replies
2.2k
views
converting probeset id to gene id's : fRMA
probe affy convert frma probe affy convert frma
updated 7.9 years ago by ★ 2.6k • written 7.9 years ago by ▴ 170
0
votes
0
replies
746
views
回复: Re: fRMA package
affxparser frma GenomicRanges affxparser frma GenomicRanges
8.8 years ago Hanyine ▴ 30
50 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by karenserrano • 0
Hi Johannes, Could I request the same EnsDb creation for Medicago truncatula? Thank you very much, Karen
Answer: EnrichGO not working with db created from annotationhub by Guido Hooiveld ★ 3.2k
Did you notice the first message that was returned after you ran `enrichGO()`? Thus: `--> No gene can be mapped....` This basically means…
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Hello my friends, I have exactly the same issue. May I ask if you have already solve this problem? I have tried `library(BiocParallel) regi…
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Yes we are currently working on generating a small example for cellCounts.
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Hi Dr Sudbery, yes I found looking at the coverage in IGV helps a lot. I did find some differences between CDS and UTR and between samples.…
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Comment: Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
C: Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with o
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Answer: Handling NA values in limma's voom design matrix
Answer: Handling NA values in limma's voom design matrix
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