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frmatools
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2.5k
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Seperate quantile normalization but common probe summary by median polish (oligo package)?
Normalization
probe
oligo
frma
frmaTools
Normalization
probe
oligo
frma
frmaTools
11.7 years ago
Schott, Johanna
▴ 20
2
votes
8
replies
2.4k
views
frma vectors for GPL13158 (Affymetrix HT HG-U133+ PM Array Plate)?
frma
frmatools
updated 9.2 years ago by
Matthew McCall
▴ 830 • written 9.2 years ago by
Ryan C. Thompson
★ 7.9k
0
votes
4
replies
1.6k
views
fRMA error - unable to create unique mapping
frma
frmatools
affy
updated 7.5 years ago by
Matthew McCall
▴ 830 • written 7.5 years ago by
yesitsjess
• 0
0
votes
6
replies
1.5k
views
barcode with custom CDF
cdf
frma
frmaTools
cdf
frma
frmaTools
updated 11.0 years ago by
Stephen Piccolo
▴ 590 • written 11.0 years ago by
Guest User
★ 13k
0
votes
2
replies
1.5k
views
frma for Nimblegen arrays?
Microarray
Annotation
Normalization
affy
PROcess
safe
frma
frmaTools
Microarray
affy
updated 11.4 years ago by
Benilton Carvalho
★ 4.3k • written 11.4 years ago by
wrighth
▴ 260
2
votes
2
replies
1.4k
views
Strategies for fRMA on custom dataset(s)?
frma
frmatools
updated 9.1 years ago by
Matthew McCall
▴ 830 • written 9.1 years ago by
Ryan C. Thompson
★ 7.9k
0
votes
2
replies
1.2k
views
How many arrays are "enough" for creating useful fRMA vectors?
annotation
frma
frmatools
updated 9.3 years ago by
Matthew McCall
▴ 830 • written 9.3 years ago by
Tim Triche
★ 4.2k
2
votes
3
replies
1.2k
views
How to create vectors (makeVectorsAffyBatch) , using own cdf
affymetrix microarrays
frmatools
altcdfenvs
updated 6.1 years ago by
Matthew McCall
▴ 830 • written 6.1 years ago by
osieman52
• 0
0
votes
0
replies
1.1k
views
In the frmaTools package, how can I makeVectorsFeatureSet() output include probeVecCore like the pre-built vectors?
frma
frmatools
affymetrix microarrays
8.0 years ago
jperezrogers
• 0
0
votes
1
reply
1.1k
views
Seperate quantile normalization but common probe summary by median polish (oligo package)?
Normalization
probe
frma
frmaTools
Normalization
probe
frma
frmaTools
updated 11.7 years ago by
James W. MacDonald
65k • written 11.7 years ago by
Guest User
★ 13k
0
votes
1
reply
1.1k
views
frmaTools library error :: makeVectorsAffyBatch() function
Microarray
probe
frma
frmaTools
Microarray
probe
frma
frmaTools
updated 10.8 years ago by
Matthew McCall
▴ 830 • written 10.8 years ago by
Tae-Hoon Chung
▴ 70
0
votes
2
replies
1.1k
views
error in makeVectorsAffyBatch of frmaTools package
cdf
frmaTools
cdf
frmaTools
updated 10.8 years ago by
Matthew McCall
▴ 830 • written 10.8 years ago by
Ty Thomson
▴ 100
0
votes
1
reply
1.0k
views
frmaTools library error :: makeVectorsAffyBatch() function
probe
frmaTools
probe
frmaTools
updated 10.8 years ago by
Matthew McCall
▴ 830 • written 10.8 years ago by
Tae-Hoon Chung
▴ 70
0
votes
0
replies
993
views
error when running makeVectorsAffyBatch
frmaTools
frmaTools
10.4 years ago
Loraine, Ann
▴ 50
0
votes
2
replies
895
views
HG-U219 vectors for fRMA?
frma
frmatools
updated 5.9 years ago by
Matthew McCall
▴ 830 • written 6.0 years ago by
skol
• 0
1
vote
3
replies
317
views
frma normalization
frmaTools
affy
updated 5 weeks ago by
James W. MacDonald
65k • written 5 weeks ago by
michelafrancesconi8
• 0
16 results • Page
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Answer: Minfi - estimatecellscount
by
James W. MacDonald
65k
Don't filter first. You are likely removing the CpGs that are used to estimate the cell counts.
Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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