Biostar Gage

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gage RNASeq gageData Pathways

11 weeks ago OST • 0

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gage plot RNASeq goseq

updated 3 months ago by Michael Love 37k • written 3 months ago by m.glymenaki • 0

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kegg pathway analysis non-model gage pathview

updated 11 months ago by najib • 0 • written 3.9 years ago by bekah ▴ 20

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gage gage package pathview rna-seq

updated 3 months ago by Helen • 0 • written 4.4 years ago by tarun2 • 0

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Answer: ComplexHeatmap: Change font size of annotation axis values by nalaspina • 0

Someone on the original post was kind enough to provide the answer (in bold below): row_ha = rowAnnotation(foo2 = runif(10), bar2 = anno…

Answer: setting sizeFactors from scran :: caculateSumFactors. by ATpoint ★ 1.3k

You can conveniently convert your SingleCellExperiment to a DESeqDataSet, see https://bioconductor.org/packages/devel/bioc/vignettes/scran/…

Comment: Combine GRanges(List) to a single GRanges with unified breakpoints by Rodrigo • 0

@malcolm-cook-6293, thank you for your response, I'm working through your code as we speak.

Comment: package 'BiocInstaller' is not available (for R version 3.4.4) by James W. MacDonald 60k

I assume the politics have to do with the site-wide version of R? In over 20 years of using R, I have very rarely relied on an installation…

Comment: package 'BiocInstaller' is not available (for R version 3.4.4) by Kevin • 0

James, I really appreciate your quick response. It was very helpful to see that it worked on your end. It helped us narrow down the proble…

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Answer: setting sizeFactors from scran :: caculateSumFactors.

Answer: ComplexHeatmap: Change font size of annotation axis values

Comment: package 'BiocInstaller' is not available (for R version 3.4.4)

A: svaseq: how many and which surrogate variables to pick

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Scholar to jaro.slamecka ▴ 130

Scholar to James W. MacDonald 60k

Teacher to Gordon Smyth 45k