Bioconductor GageData

Showing : gageData • reset

votes

547

views

gageData gage

11 months ago Lucas • 0

votes

replies

653

views

kegg.gsets gageData gage KEGG

20 months ago cereyredondo • 0

votes

replies

1.2k

views

gage RNASeq gageData Pathways

3.9 years ago OST • 0

votes

replies

2.5k

views

KEGG gage gageData pathview

updated 5.0 years ago by Luo Weijun ★ 1.6k • written 5.0 years ago by MOHAMMAD • 0

votes

replies

986

views

gage gageData

5.0 years ago jd348 • 0

vote

replies

1.8k

views

gage pathview gageData

written 5.1 years ago by Emilia ▴ 40

6 results • Page 1 of 1

Recent ...

Replies

Comment: Subsetting DDS object for individual conditions over time by A ▴ 60

Hi @atpoint Thank you for the quick reply! and this makes sense! I will confirm with a corr to see how the SFs differ but also how DE dif…

Answer: Subsetting DDS object for individual conditions over time by ATpoint ★ 5.0k

It would surprise my quite a bit if the size factors would differ notably between subset or not. I would always try to keep the size factor…

Comment: GSEA error by Adithi • 0

Thank you so much. That makes perfect sense to me. I will work on this.

Comment: tximeta cannot open annotation gtf? by Michael Love 43k

Yes, so this is the same type of error you would get if you tried to assemble a *SummarizedExperiment* manually with tximport + GTF process…

Answer: tximeta cannot open annotation gtf? by ATpoint ★ 5.0k

> Timeout of 60 seconds was reached You have to increase the default timeout limits for downloads, `options(timeout=3600)`. GENCODE serve…

Votes

Answer: RNA Seq using Lrt

Answer: DESeq2 LRT Reduced Formula

Answer: DESeq2: LRT or WALD guidance

Answer: GSEA error

Answer: OrgDb for maize

Awards • All