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Answer: How should I run ssGSEA Hallmark Enrichment Analysis? by Robert Castelo ★ 3.0k
Hi, While you are not naming it explicitly in your question, from your tags and the line of code you've pasted, I assume you are interes…
Comment: bam or VCF files from GSE75010 by ATpoint ★ 3.6k
Cross-posted and same answer https://www.biostars.org/p/9581347/ Anyway, this question does not belong as unrelated to Bioconductor.
Comment: Problem loading HDF5Array in R 4.3.2 by Mike Smith ★ 6.2k
Great, I'm glad it worked. It's frustrating that the binary doesn't work for you; that shouldn't happen! However I'm not sure how to go a…
Comment: It's possible to use clusterProfiler without an annotationDBI package by Guido Hooiveld ★ 3.8k
No, I don't. Confirm that `geneList` has the expected format. What is the outcome of `geneList[1:5]`, `str(geneList)` and `class(geneList)…
Comment: It's possible to use clusterProfiler without an annotationDBI package by Guido Hooiveld ★ 3.8k
Did you try it yourselves? But the answer is yes.
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Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default
Comment: Problem loading HDF5Array in R 4.3.2
Answer: gseGO input list
Answer: Problem loading HDF5Array in R 4.3.2
Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default
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