Showing : gcrma • reset
0
votes
8
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1.8k
views
error message in gcrma
cdf affy gcrma matchprobes plier cdf affy gcrma matchprobes plier
updated 17.9 years ago by ★ 7.4k • written 17.9 years ago by ▴ 520
0
votes
8
replies
1.3k
views
gcrma problem
gcrma gcrma
19.1 years ago Wenqiong Chen ▴ 120
0
votes
15
replies
2.1k
views
affy & problems with memory
affy gcrma affy gcrma
updated 18.3 years ago by ▴ 210 • written 18.3 years ago by ▴ 110
0
votes
4
replies
1.2k
views
gcrma with bpmap file instead of cdf file
cdf gcrma cdf gcrma
17.3 years ago Baoqiang Cao ▴ 30
0
votes
4
replies
1.2k
views
Problems with Hu6800 and GCRMA...
Microarray hu6800 probe gcrma Microarray hu6800 probe gcrma
20.1 years ago Stiles, David NIH/NIDDK ▴ 50
0
votes
4
replies
1.1k
views
win 64bit and general BioC computing power?
GO Clustering affy limma gcrma PROcess GO Clustering affy limma gcrma PROcess
updated 19.9 years ago by ▴ 360 • written 19.9 years ago by ▴ 940
0
votes
9
replies
2.7k
views
gcrma problem while processing HuGene-1_0-st-v1 genechip from Affymetrix
Normalization gcrma Normalization gcrma
11.9 years ago suparna mitra ▴ 290
0
votes
10
replies
1.9k
views
Some Genefilter questions
Normalization Survival Cancer cdf genefilter geneplotter affy affydata widgetTools gcrma
updated 17.4 years ago by ▴ 460 • written 17.4 years ago by ▴ 70
0
votes
6
replies
1.3k
views
GCRMA error
gcrma gcrma
19.0 years ago Puhong Gao ▴ 140
0
votes
4
replies
999
views
justGCRMA normalisation options?
gcrma gcrma
updated 20.1 years ago by 65k • written 20.1 years ago by ▴ 60
0
votes
4
replies
1.2k
views
GCRMA backgrounds?
SNP affy gcrma SNP affy gcrma
updated 19.8 years ago by ▴ 940 • written 19.8 years ago by ▴ 60
0
votes
7
replies
1.6k
views
Statistical comparison of low replicate affy data
affy gcrma siggenes LPE affy gcrma siggenes LPE
20.2 years ago Matthew Hannah ▴ 940
0
votes
5
replies
1.2k
views
GCRMA/RMA bimodal distribution
gcrma gcrma
updated 19.7 years ago by ★ 6.0k • written 19.7 years ago by ▴ 940
0
votes
8
replies
1.4k
views
Trouble building Bioconductor
gcrma gcrma
18.2 years ago Atro Tossavainen ▴ 160
0
votes
4
replies
1.2k
views
affy & problems with not enough avaliable memory
affy gcrma affy gcrma
updated 18.3 years ago by ▴ 830 • written 18.3 years ago by ▴ 110
0
votes
3
replies
3.7k
views
Selecting p-value cutoffs for differential expression
limma gcrma limma gcrma
updated 19.6 years ago by ▴ 20 • written 19.6 years ago by ▴ 940
0
votes
4
replies
986
views
a just.gcrma question
gcrma gcrma
updated 18.0 years ago by ▴ 200 • written 18.0 years ago by ▴ 890
0
votes
4
replies
979
views
GCRMA Normalization Differences between Windows and MAC
Normalization gcrma Normalization gcrma
updated 14.1 years ago by ▴ 260 • written 14.1 years ago by ▴ 10
0
votes
4
replies
1.9k
views
Failure to load Biobase
Biobase affy limma gcrma matchprobes affyio Biobase affy limma gcrma matchprobes affyio
updated 17.9 years ago by 25k • written 17.9 years ago by ★ 2.2k
0
votes
3
replies
1.0k
views
how long to calculate gcrma on 16 arrays?
mgu74av2 Biobase affy gcrma mgu74av2 Biobase affy gcrma
updated 20.6 years ago by 65k • written 20.6 years ago by ★ 1.4k
0
votes
5
replies
1.4k
views
Development of GCRMA-like methods
gcrma oligo gcrma oligo
20.2 years ago Matthew Hannah ▴ 940
0
votes
3
replies
992
views
hgu133_plus_2?
Clustering gcrma Clustering gcrma
updated 19.3 years ago by ▴ 150 • written 19.3 years ago by ▴ 10
0
votes
4
replies
909
views
Two rma questions
affy gcrma affy gcrma
updated 20.0 years ago by 65k • written 20.0 years ago by ▴ 180
0
votes
7
replies
1.7k
views
problem with GOstats, developmental version?
GO Survival hgu95av2 annotate affy affydata graph Rgraphviz limma gcrma matchprobes GO
updated 16.6 years ago by ★ 7.4k • written 16.6 years ago by ★ 2.2k
0
votes
6
replies
1.9k
views
ReadAffy Error: new versions causing problems?
genefilter gcrma matchprobes simpleaffy affyio genefilter gcrma matchprobes simpleaffy
updated 16.9 years ago by ▴ 20 • written 16.9 years ago by ▴ 200
0
votes
8
replies
1.5k
views
Tiling array application
probe affy gcrma probe affy gcrma
19.1 years ago Shinhan Shiu ▴ 60
0
votes
11
replies
2.7k
views
trouble hacking plotPCA
GO Survival Biobase genefilter affy affydata graph limma gcrma matchprobes affyPLM RBGL
updated 17.4 years ago by ▴ 10 • written 17.4 years ago by ★ 2.2k
0
votes
10
replies
1.5k
views
problems with gcrma just.gcrma
mgu74av2 affy gcrma mgu74av2 affy gcrma
17.4 years ago Elisabetta Manduchi ▴ 160
0
votes
4
replies
1.2k
views
How to read and normalize hundreds of CEL files?
Microarray gcrma Microarray gcrma
updated 17.4 years ago by ▴ 820 • written 17.4 years ago by ▴ 80
0
votes
4
replies
1.1k
views
Quantile normalization without using affyBatch
Normalization cdf gcrma Normalization cdf gcrma
updated 19.0 years ago by ▴ 60 • written 19.0 years ago by ▴ 60
0
votes
3
replies
2.6k
views
what normalization method does mas5 use
Normalization GO affy gcrma plier Normalization GO affy gcrma plier
updated 19.8 years ago by ▴ 100 • written 19.8 years ago by ▴ 10
0
votes
5
replies
1.8k
views
RMA and justRMA error
Cancer cdf Biobase affy gcrma affyio Cancer cdf Biobase affy gcrma affyio
17.7 years ago Aedin Culhane ▴ 510
0
votes
3
replies
1.0k
views
gcrma problem
Microarray Cancer probe gcrma ASSIGN Microarray Cancer probe gcrma ASSIGN
updated 19.1 years ago by 65k • written 19.1 years ago by ▴ 120
0
votes
3
replies
928
views
GCRMA explained in words
Cancer probe gcrma Cancer probe gcrma
updated 18.2 years ago by ▴ 200 • written 18.2 years ago by ★ 2.0k
0
votes
3
replies
1.4k
views
error in mas5calls() for soybean chip
Survival hu6800 cdf probe Biobase genefilter reposTools affy affydata limma gcrma made4
updated 18.0 years ago by ▴ 70 • written 18.0 years ago by ★ 2.2k
0
votes
4
replies
1.4k
views
Question on afy/gcrma probe indexes
probe affy gcrma probe affy gcrma
updated 20.0 years ago by ▴ 220 • written 20.0 years ago by ▴ 20
0
votes
3
replies
1.0k
views
ad hoc tools for affy tiling arrays?
Normalization Preprocessing gcrma Normalization Preprocessing gcrma
updated 18.2 years ago by ▴ 310 • written 18.2 years ago by ★ 6.5k
0
votes
2
replies
788
views
gcrma
gcrma gcrma
updated 20.6 years ago by ★ 2.3k • written 20.6 years ago by ▴ 500
0
votes
3
replies
1.4k
views
GCRMA: feature request
GO Regression probe gcrma frma GO Regression probe gcrma frma
updated 13.3 years ago by ▴ 250 • written 13.3 years ago by ★ 3.9k
0
votes
2
replies
686
views
GCRMA with custom chips
probe gcrma probe gcrma
updated 18.4 years ago by 65k • written 18.5 years ago by ▴ 50
0
votes
3
replies
950
views
gcrma
mgu74av2 gcrma GENE.E mgu74av2 gcrma GENE.E
updated 20.6 years ago by ▴ 410 • written 20.6 years ago by ▴ 30
0
votes
2
replies
838
views
GCRMA, identical normalized values from 3 replicates
affy gcrma affy gcrma
updated 18.7 years ago by ▴ 200 • written 18.7 years ago by ▴ 810
0
votes
2
replies
1.6k
views
gcRMA and normalization
Normalization gcrma Normalization gcrma
updated 18.7 years ago by ▴ 200 • written 18.7 years ago by ▴ 210
0
votes
2
replies
1.1k
views
GCRMA error
gcrma gcrma
19.2 years ago Dion Whitehead ▴ 50
0
votes
2
replies
1.1k
views
iterative gcrma on 92 slides?
Normalization mgu74av2 gcrma PROcess Normalization mgu74av2 gcrma PROcess
updated 20.2 years ago by ▴ 130 • written 20.2 years ago by ★ 1.4k
0
votes
3
replies
925
views
gcrma
gcrma gcrma
19.3 years ago Lana Schaffer ★ 1.3k
0
votes
2
replies
1.1k
views
SE in RMA and GCRMA
gcrma gcrma
updated 19.6 years ago by ▴ 410 • written 19.6 years ago by ▴ 120
0
votes
2
replies
857
views
RMA question
gcrma gcrma
updated 20.7 years ago by ★ 2.3k • written 20.7 years ago by ▴ 720
0
votes
8
replies
1.4k
views
gcrma output id
affy gcrma affy gcrma
19.5 years ago Dianjing Guo ▴ 90
0
votes
2
replies
890
views
Cannot find hgu133aprobe package
gcrma gcrma
updated 20.1 years ago by ▴ 310 • written 20.1 years ago by ▴ 250
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Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
How am i making the data? I am using the DESeq2 output data which I had generated
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k
Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …
Answer: Citation for edgeR user guide by Gordon Smyth 50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k
What do you mean by 'the information'? Do you have things in particular that you want?
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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