Bioconductor Gdc

Showing : gdc • reset

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3.6k

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tcgabiolinks gdc

8.2 years ago jshelton • 0

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3.8k

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gdc tcga wes gdc data

updated 6.8 years ago by Sean Davis 21k • written 6.8 years ago by Biologist ▴ 120

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1.9k

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R gdc rna-seq dna methylation

updated 6.2 years ago by Sean Davis 21k • written 6.2 years ago by RichardJActon ▴ 50

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1.5k

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TCGAbiolinks TCGA GDC

5.1 years ago modarzi ▴ 10

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1.4k

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genomicdatacommons tcga gdc rest http

updated 6.0 years ago by Sean Davis 21k • written 6.0 years ago by mk ▴ 20

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4.1k

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tcgabiolinks tcga tcgadownload gdcprepare gdc

updated 7.8 years ago by Tiago Chedraoui Silva ▴ 260 • written 8.0 years ago by enigmargs • 0

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2.5k

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GDC TCGA tcgabiolinks

updated 2.8 years ago by cute scientist • 0 • written 6.2 years ago by Antonio Ahn ▴ 10

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1.6k

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TCGA MAF GDC snp mutations

updated 5.7 years ago by Sean Davis 21k • written 5.7 years ago by mario.zanfardino ▴ 160

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3.4k

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tcgabiolinks tcga-brca gdc pam50 rna-seq

6.8 years ago pfrancislyon • 0

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774

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TCGA GenomicDataCommons GDC

written 18 months ago by António Miguel de Jesus Domingues ▴ 510

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880

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TCGAbiolinks GDC TCGA

5.1 years ago modarzi ▴ 10

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1.2k

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tcgabiolinks filtering gdc TCGABiolinks rnaseq

5.0 years ago jam526 • 0

12 results • Page 1 of 1

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Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Let me see if I can add some code to tximeta to cover this case. I've added an argument `skipRanges` in devel branch which should allow: …

Votes

Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

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