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gdcprepare
•
reset
0
votes
8
replies
2.6k
views
TCGAbiolinks GDCprepare fails to connect to Biomart web server
tcgabiolinks
gdcprepare
7.6 years ago
sabarinath.chandrasekharan
▴ 10
4
votes
5
replies
2.5k
views
GDCprepare - error
TCGABiolinks
GDCprepare
4.8 years ago
vm
▴ 30
1
vote
5
replies
1.6k
views
Issue with TCGAbiolinks package.
TCGA
GDCprepare
5.2 years ago
salvocomplicazioni1
• 0
0
votes
3
replies
1.4k
views
TCGA controlled data
R
tcgabiolinks
gdcprepare
6.9 years ago
ugandhar.ch1
• 0
0
votes
2
replies
3.7k
views
Extract gene expression values from GDCprepare object
tcgabiolinks
tcga
tcgadownload
gdcprepare
gdc
updated 7.1 years ago by
Tiago Chedraoui Silva
▴ 260 • written 7.2 years ago by
enigmargs
• 0
0
votes
2
replies
1.8k
views
GDCprepare stop working for some unknown reason
tcgabiolinks
gdcprepare
updated 5.4 years ago by
James W. MacDonald
65k • written 5.4 years ago by
ansari.sarabio
• 0
2
votes
2
replies
1.5k
views
TCGAbiolinks GDCprepare error
TCGAbiolinks
GDCprepare
error
updated 4.8 years ago by
Tiago C. Silva
▴ 270 • written 4.8 years ago by
Talip Zengin
▴ 10
0
votes
1
reply
1.6k
views
How to get treatment information with TCGAbiolinks?
gdcprepare
tcgabiolinks
treatment_type
R
data extraction
updated 6.8 years ago by
Dario Strbenac
★ 1.5k • written 6.9 years ago by
newbie
• 0
0
votes
1
reply
1.2k
views
Error during GDCprepare
tcgabiolinks
gdcprepare
updated 7.6 years ago by
Tiago C. Silva
▴ 270 • written 7.7 years ago by
Mariana Boroni
▴ 10
0
votes
0
replies
710
views
Error in GDCDownload and GDCPrepare for TCGA-PAAD Dataset
GDCPrepare
GDCDownload
20 months ago
Manav
• 0
0
votes
0
replies
828
views
Reasoning for illegal operation
tcgabiolinks
illegaloperation
gdcprepare
6.4 years ago
lisa8191
• 0
0
votes
0
replies
1.4k
views
GDCprepare error in TCGAbiolinks
tcgabiolinks
gdcprepare
differential expression
4.5 years ago
fawazfebin
▴ 60
12 results • Page
1 of 1
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Replies
Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
by
Guangchuang Yu
★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference
by
andrebolerbarros
▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
ATpoint
★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference
by
ATpoint
★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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ATpoint
★ 4.0k
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Gordon Smyth
50k
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i.sudbery
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Michael Love
41k
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shepherl
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