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gdcquery
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TCGABiolinks::GDCquery() suddenly sending back unknown error
software error
error
tcgabiolinks
GDCquery
updated 6.4 years ago by
eshelden
▴ 40 • written 6.4 years ago by
jrlarsen
▴ 10
0
votes
2
replies
2.5k
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Workflow type=Star_counts, I want to download FPKM or TPM values, but star_counts for which?
GDCquery
21 months ago
yuanyuan
• 0
0
votes
0
replies
633
views
how include slicing to manifest
gdcquery
6.0 years ago
dvortsov
• 0
0
votes
0
replies
1.2k
views
Error in value[[3L]](cond) : GDC server down, try to use this package later
GDCquery
5.8 years ago
sechenmo
• 0
0
votes
0
replies
933
views
TCGAbiolinks specific mutation query
TCGAbiolinks
TCGA
Mutation
GDCquery
rnaseq
5.0 years ago
Yonatan Amzaleg
• 0
5 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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