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genbankr
•
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0
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0
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446
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genbankr throwing C stack usage error when reading in files >500Kb
genbankr
2.5 years ago
Lauren
• 0
0
votes
3
replies
1.5k
views
Retrieve GenBank file using RefSeq ID
genbankr
updated 3.4 years ago by
Nicholas Cooley
• 0 • written 3.4 years ago by
heiko_kin
▴ 60
0
votes
4
replies
1.2k
views
Gene information (GRanges + sequence) to GenBank
granges
genomic ranges
genbankr
ensembldb
updated 3.5 years ago by
James W. MacDonald
65k • written 3.5 years ago by
biomiha
▴ 20
0
votes
0
replies
679
views
readGenbank can't handle multiple contigs?
genbankr
parsing
4.0 years ago
sean.c.m.booth
• 0
0
votes
0
replies
628
views
genbankr problem while parsing gb file
genbankr
4.6 years ago
jeyp
• 0
0
votes
0
replies
823
views
Error in parseGenBank
genbankr
parseGenBank
gbk
error
4.8 years ago
ashley.dederich
• 0
0
votes
2
replies
854
views
Pulling Genbank Annotation Information via library(genbankr)
genbankr
genbank
annotation
5.7 years ago
story.benjamin
▴ 20
0
votes
1
reply
1.1k
views
genbankr fails when reading GBK file
genbankr
updated 6.1 years ago by
becker.gabriel
▴ 10 • written 6.4 years ago by
Monther Alhamdoosh
▴ 40
0
votes
1
reply
940
views
problem with genbankr
genbankr
updated 6.1 years ago by
becker.gabriel
▴ 10 • written 6.2 years ago by
inookaew
• 0
2
votes
1
reply
1.4k
views
Importing genbank entries for synthetic constructs
genbankr
updated 7.4 years ago by
becker.gabriel
▴ 10 • written 7.4 years ago by
Thomas Sandmann
▴ 90
10 results • Page
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Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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