Bioconductor Genbankr

Showing : genbankr • reset

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1.1k

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genbankr

updated 6.1 years ago by becker.gabriel ▴ 10 • written 6.4 years ago by Monther Alhamdoosh ▴ 40

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940

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genbankr

updated 6.1 years ago by becker.gabriel ▴ 10 • written 6.2 years ago by inookaew • 0

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1.2k

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granges genomic ranges genbankr ensembldb

updated 3.5 years ago by James W. MacDonald 65k • written 3.5 years ago by biomiha ▴ 20

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1.5k

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genbankr

updated 3.4 years ago by Nicholas Cooley • 0 • written 3.4 years ago by heiko_kin ▴ 60

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1.4k

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genbankr

updated 7.4 years ago by becker.gabriel ▴ 10 • written 7.4 years ago by Thomas Sandmann ▴ 90

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446

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genbankr

2.5 years ago Lauren • 0

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854

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genbankr genbank annotation

5.7 years ago story.benjamin ▴ 20

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823

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genbankr parseGenBank gbk error

4.8 years ago ashley.dederich • 0

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628

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genbankr

4.6 years ago jeyp • 0

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679

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genbankr parsing

4.0 years ago sean.c.m.booth • 0

10 results • Page 1 of 1

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…

Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0