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genbankr
•
reset
0
votes
0
replies
445
views
genbankr throwing C stack usage error when reading in files >500Kb
genbankr
2.5 years ago
Lauren
• 0
0
votes
3
replies
1.5k
views
Retrieve GenBank file using RefSeq ID
genbankr
updated 3.4 years ago by
Nicholas Cooley
• 0 • written 3.4 years ago by
heiko_kin
▴ 60
0
votes
4
replies
1.2k
views
Gene information (GRanges + sequence) to GenBank
granges
genomic ranges
genbankr
ensembldb
updated 3.5 years ago by
James W. MacDonald
65k • written 3.5 years ago by
biomiha
▴ 20
0
votes
0
replies
679
views
readGenbank can't handle multiple contigs?
genbankr
parsing
4.0 years ago
sean.c.m.booth
• 0
0
votes
0
replies
627
views
genbankr problem while parsing gb file
genbankr
4.6 years ago
jeyp
• 0
0
votes
0
replies
823
views
Error in parseGenBank
genbankr
parseGenBank
gbk
error
4.8 years ago
ashley.dederich
• 0
0
votes
2
replies
854
views
Pulling Genbank Annotation Information via library(genbankr)
genbankr
genbank
annotation
5.7 years ago
story.benjamin
▴ 20
0
votes
1
reply
1.1k
views
genbankr fails when reading GBK file
genbankr
updated 6.1 years ago by
becker.gabriel
▴ 10 • written 6.4 years ago by
Monther Alhamdoosh
▴ 40
0
votes
1
reply
936
views
problem with genbankr
genbankr
updated 6.1 years ago by
becker.gabriel
▴ 10 • written 6.2 years ago by
inookaew
• 0
2
votes
1
reply
1.4k
views
Importing genbank entries for synthetic constructs
genbankr
updated 7.4 years ago by
becker.gabriel
▴ 10 • written 7.4 years ago by
Thomas Sandmann
▴ 90
10 results • Page
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Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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