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gene
•
reset
9
votes
10
replies
1.4k
views
Mapping of GENE symbols into ENTREZ
limma
annotation
Gene
4.6 years ago • updated 4.2 years ago
omarrafiqued
▴ 50
6
votes
7
replies
2.2k
views
GEOquery reading error on Windows.
GEOquery
GEO
Gene
updated 2.4 years ago by
James W. MacDonald
65k • written 2.4 years ago by
Caitlin
▴ 50
2
votes
5
replies
1.2k
views
DESeq2-result files (.csv): Is there a convention for the IDs (e.g. gene names if produced for genes)
deseq2
gene
format
4.7 years ago
miriam.mueller
• 0
0
votes
5
replies
6.2k
views
Adding information to the DESeq2 output file (gene name and expression levels for each sample(
deseq2
gene
columns
output
updated 8.5 years ago by
Michael Love
41k • written 8.5 years ago by
amyfm
▴ 10
5
votes
5
replies
1.8k
views
threeUTRsByTranscript per GENE
GenomicFeatures
Transcript
gene
threeUTRsByTranscript
updated 3.2 years ago by
Dario Strbenac
★ 1.5k • written 4.6 years ago by
amgtech
▴ 10
1
vote
4
replies
1.1k
views
gene Isoforms quantification using RNA-seq data
gene
isoform
quantification
rna-seq
updated 4.6 years ago by
swbarnes2
★ 1.3k • written 4.6 years ago by
angel.campos
• 0
0
votes
4
replies
986
views
Fonction of genes/metabolites in a pathway?
gene
metabolite
functionnal annotation
pathways
updated 4.1 years ago by
Kevin Blighe
★ 3.9k • written 4.1 years ago by
emisecherre
• 0
1
vote
4
replies
790
views
RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA
gene
RNASeqRData
edgeR
geneontology
18 months ago
faiza
• 0
2
votes
4
replies
954
views
Joint pathway Analysis using both gene and metabolite data sets
data integration
gene
metabolite
4.1 years ago
emisecherre
• 0
0
votes
3
replies
995
views
PureCN gene LOH very common, amp/del not
PureCN
gene
amplification
deletion
loh
updated 3.9 years ago by
markus.riester
▴ 130 • written 3.9 years ago by
twtoal
▴ 10
3
votes
3
replies
1.2k
views
Discrepancies between topGO output and input
go
topGO
gene
ontology
enrichment
updated 4.8 years ago by
James W. MacDonald
65k • written 4.8 years ago by
t.bergmann
• 0
1
vote
3
replies
1.7k
views
copy number variation analysis (CNV)
copynumber
plot
visualization
NGS
gene
updated 3.4 years ago by
Ram
▴ 190 • written 3.5 years ago by
sijing.gsj
• 0
3
votes
2
replies
3.5k
views
How to Find OMIM id's Corresponding to a List of Gene Symbols in R?
microarray
omim
gene
disorder
updated 9.1 years ago by
Kamil Slowikowski
▴ 30 • written 9.1 years ago by
pankajnarula84
▴ 20
0
votes
2
replies
3.6k
views
Web Scraping From Pubmd (I want to extract gene articles form pubmed abstract and pubmed id i want to extract for number of genes)
cancer
gene
updated 5.1 years ago by
Martin Morgan
25k • written 5.1 years ago by
venkatarao142152
• 0
6
votes
2
replies
2.2k
views
How to add my own Entrez Gene IDs rather than using the ones from a default package?
annotation
entrez
gene
ids
software error
updated 5.0 years ago by
Gordon Smyth
50k • written 5.0 years ago by
Raito92
▴ 60
0
votes
2
replies
997
views
I want to use global test.
gene
r
clst
rpy
globaltest
3.0 years ago
Kim
• 0
1
vote
2
replies
719
views
gene ontologies for a set of genes
gene
ontology
2.7 years ago
Bogdan
▴ 670
0
votes
2
replies
3.6k
views
Gene body coverage plot
plot
gene
GenomicRanges
Coverage
R
updated 2.1 years ago by
kent.riemondy
▴ 20 • written 2.1 years ago by
svenbioinf
• 0
0
votes
2
replies
537
views
How to find the number of protein-coding genes in each chromosome arm in human?
gene
chromosome
proteincodinggene
12 months ago
Liliian
• 0
0
votes
2
replies
1.6k
views
How to filter the coding protein genes by EnsDb.Hsapiens.v86
EnsDb.Hsapiens.v86
gene
2.1 years ago
beslinail
• 0
3
votes
2
replies
529
views
please resolve the issue
gene
ExpressionData
updated 13 months ago by
James W. MacDonald
65k • written 13 months ago by
sonal
• 0
0
votes
1
reply
800
views
WGCNA - Network construction and module detection
gene
Clustering
wgcna
flashclust
updated 19 months ago by
andres.firrincieli
▴ 50 • written 20 months ago by
Recep
▴ 20
0
votes
1
reply
291
views
gene aligning reference
geneRecommender
gene
updated 5 months ago by
James W. MacDonald
65k • written 5 months ago by
Gülsüm
• 0
0
votes
0
replies
520
views
Gene expression changes in one condition
RNASeq
Gene
ExpressionData
2.4 years ago
AZ
▴ 30
0
votes
0
replies
446
views
topGO: how do I retrieve my genes contributing to the GO term enrichment
gene
enrichment
topGO
GO
retrieve
12 months ago
Priya
• 0
0
votes
0
replies
613
views
TFutils database
TFutils
mouse
gene
convert
2.9 years ago
nicocillari
• 0
26 results • Page
1 of 1
Recent ...
Replies
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Awards
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to
Robert Castelo
★ 3.2k
Popular Question
to
James W. MacDonald
65k
Popular Question
to
shepherl
3.8k
Popular Question
to
BioinfGuru
▴ 30
Popular Question
to
Gordon Smyth
50k
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