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gene
•
reset
9
votes
10
replies
1.9k
views
Mapping of GENE symbols into ENTREZ
limma
annotation
Gene
5.4 years ago • updated 4.9 years ago
omarrafiqued
▴ 50
6
votes
7
replies
2.8k
views
GEOquery reading error on Windows.
GEOquery
GEO
Gene
updated 3.2 years ago by
James W. MacDonald
67k • written 3.2 years ago by
Caitlin
▴ 50
6
votes
2
replies
2.6k
views
How to add my own Entrez Gene IDs rather than using the ones from a default package?
annotation
entrez
gene
ids
software error
updated 5.8 years ago by
Gordon Smyth
52k • written 5.8 years ago by
Raito92
▴ 60
5
votes
5
replies
2.4k
views
threeUTRsByTranscript per GENE
GenomicFeatures
Transcript
gene
threeUTRsByTranscript
updated 3.9 years ago by
Dario Strbenac
★ 1.5k • written 5.4 years ago by
amgtech
▴ 10
3
votes
2
replies
3.8k
views
How to Find OMIM id's Corresponding to a List of Gene Symbols in R?
microarray
omim
gene
disorder
updated 9.8 years ago by
Kamil Slowikowski
▴ 30 • written 9.8 years ago by
pankajnarula84
▴ 20
3
votes
3
replies
1.5k
views
Discrepancies between topGO output and input
go
topGO
gene
ontology
enrichment
updated 5.6 years ago by
James W. MacDonald
67k • written 5.6 years ago by
t.bergmann
• 0
3
votes
2
replies
766
views
please resolve the issue
gene
ExpressionData
updated 22 months ago by
James W. MacDonald
67k • written 22 months ago by
sonal
• 0
2
votes
4
replies
1.2k
views
Joint pathway Analysis using both gene and metabolite data sets
data integration
gene
metabolite
4.9 years ago
emisecherre
• 0
2
votes
5
replies
1.5k
views
DESeq2-result files (.csv): Is there a convention for the IDs (e.g. gene names if produced for genes)
deseq2
gene
format
5.5 years ago
miriam.mueller
• 0
1
vote
4
replies
1.4k
views
gene Isoforms quantification using RNA-seq data
gene
isoform
quantification
rna-seq
updated 5.4 years ago by
swbarnes2
★ 1.4k • written 5.4 years ago by
angel.campos
• 0
1
vote
3
replies
2.2k
views
copy number variation analysis (CNV)
copynumber
plot
visualization
NGS
gene
updated 4.1 years ago by
Ram
▴ 220 • written 4.3 years ago by
sijing.gsj
• 0
1
vote
4
replies
1.1k
views
RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA
gene
RNASeqRData
edgeR
geneontology
2.2 years ago
faiza
• 0
1
vote
2
replies
936
views
gene ontologies for a set of genes
gene
ontology
3.5 years ago
Bogdan
▴ 670
0
votes
5
replies
6.8k
views
Adding information to the DESeq2 output file (gene name and expression levels for each sample(
deseq2
gene
columns
output
updated 9.2 years ago by
Michael Love
43k • written 9.2 years ago by
amyfm
▴ 10
0
votes
2
replies
1.3k
views
I want to use global test.
gene
r
clst
rpy
globaltest
3.8 years ago
Kim
• 0
0
votes
0
replies
645
views
topGO: how do I retrieve my genes contributing to the GO term enrichment
gene
enrichment
topGO
GO
retrieve
21 months ago
Priya
• 0
0
votes
0
replies
668
views
Gene expression changes in one condition
RNASeq
Gene
ExpressionData
3.2 years ago
AZ
▴ 30
0
votes
2
replies
4.1k
views
Web Scraping From Pubmd (I want to extract gene articles form pubmed abstract and pubmed id i want to extract for number of genes)
cancer
gene
updated 5.9 years ago by
Martin Morgan
25k • written 5.9 years ago by
venkatarao142152
• 0
0
votes
1
reply
476
views
gene aligning reference
geneRecommender
gene
updated 14 months ago by
James W. MacDonald
67k • written 14 months ago by
Gülsüm
• 0
0
votes
2
replies
4.9k
views
Gene body coverage plot
plot
gene
GenomicRanges
Coverage
R
updated 2.8 years ago by
kent.riemondy
▴ 20 • written 2.9 years ago by
svenbioinf
• 0
0
votes
0
replies
774
views
TFutils database
TFutils
mouse
gene
convert
3.7 years ago
nicocillari
• 0
0
votes
2
replies
987
views
How to find the number of protein-coding genes in each chromosome arm in human?
gene
chromosome
proteincodinggene
21 months ago
Liliian
• 0
0
votes
2
replies
2.1k
views
How to filter the coding protein genes by EnsDb.Hsapiens.v86
EnsDb.Hsapiens.v86
gene
2.9 years ago
beslinail
• 0
0
votes
4
replies
1.3k
views
Fonction of genes/metabolites in a pathway?
gene
metabolite
functionnal annotation
pathways
updated 4.8 years ago by
Kevin Blighe
★ 4.0k • written 4.8 years ago by
emisecherre
• 0
0
votes
3
replies
1.4k
views
PureCN gene LOH very common, amp/del not
PureCN
gene
amplification
deletion
loh
updated 4.7 years ago by
markus.riester
▴ 130 • written 4.7 years ago by
twtoal
▴ 10
0
votes
1
reply
1.1k
views
WGCNA - Network construction and module detection
gene
Clustering
wgcna
flashclust
updated 2.4 years ago by
andres.firrincieli
▴ 50 • written 2.4 years ago by
Recep
▴ 20
26 results • Page
1 of 1
Recent ...
Replies
Answer: WGCNA sample-data preprocessing order
by
ATpoint
★ 4.6k
Hi, WGCNA is not a Bioconductor package, please read the documentation to get guidance. See https://support.bioconductor.org/p/9155561/. …
Answer: WGCNA: Can we use high power (26) for signed network?
by
ATpoint
★ 4.6k
Hi, WGCNA is not a Bioconductor package, please read the documentation to get guidance. See https://support.bioconductor.org/p/9155561/. C…
Answer: Ph.D. scholar
by
ATpoint
★ 4.6k
Hi, WGCNA is not a Bioconductor package, please read the documentation to get guidance. See https://support.bioconductor.org/p/9155561/. C…
Comment: Recount3 data correspond to TCGA data
by
Fep29
• 0
Hi, This the solution to mapping TCGA ids in Recount3 to the ids used in the TCGA barcodes: library(recount3) human_projects <- …
Answer: Unable to find sample sheet file for ChAMP methylation data analysis
by
James W. MacDonald
67k
There is an example file in the extdata directory of the `minfiData` package that you could emulate.
Votes
Answer: DESeq2- merging technical vs biological replicates
Answer: SingleCellExperiment convenience function for metadata+expression?
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
Answer: EdgeR Biological CVs
Answer: Error in download.file for TCGAutils::symbolsToRanges
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shepherl
4.1k
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Martin Morgan
25k
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to
Guido Hooiveld
★ 4.1k
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Joseph Fass
▴ 70
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Peter Hickey
▴ 750
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