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gene
•
reset
9
votes
10
replies
1.4k
views
Mapping of GENE symbols into ENTREZ
limma
annotation
Gene
4.6 years ago • updated 4.1 years ago
omarrafiqued
▴ 50
6
votes
7
replies
2.1k
views
GEOquery reading error on Windows.
GEOquery
GEO
Gene
updated 2.4 years ago by
James W. MacDonald
65k • written 2.4 years ago by
Caitlin
▴ 50
6
votes
2
replies
2.1k
views
How to add my own Entrez Gene IDs rather than using the ones from a default package?
annotation
entrez
gene
ids
software error
updated 5.0 years ago by
Gordon Smyth
50k • written 5.0 years ago by
Raito92
▴ 60
5
votes
5
replies
1.8k
views
threeUTRsByTranscript per GENE
GenomicFeatures
Transcript
gene
threeUTRsByTranscript
updated 3.1 years ago by
Dario Strbenac
★ 1.5k • written 4.6 years ago by
amgtech
▴ 10
3
votes
2
replies
3.4k
views
How to Find OMIM id's Corresponding to a List of Gene Symbols in R?
microarray
omim
gene
disorder
updated 9.0 years ago by
Kamil Slowikowski
▴ 30 • written 9.0 years ago by
pankajnarula84
▴ 20
3
votes
3
replies
1.1k
views
Discrepancies between topGO output and input
go
topGO
gene
ontology
enrichment
updated 4.7 years ago by
James W. MacDonald
65k • written 4.7 years ago by
t.bergmann
• 0
3
votes
2
replies
514
views
please resolve the issue
gene
ExpressionData
updated 12 months ago by
James W. MacDonald
65k • written 12 months ago by
sonal
• 0
2
votes
4
replies
932
views
Joint pathway Analysis using both gene and metabolite data sets
data integration
gene
metabolite
4.0 years ago
emisecherre
• 0
2
votes
5
replies
1.2k
views
DESeq2-result files (.csv): Is there a convention for the IDs (e.g. gene names if produced for genes)
deseq2
gene
format
4.7 years ago
miriam.mueller
• 0
1
vote
4
replies
1.1k
views
gene Isoforms quantification using RNA-seq data
gene
isoform
quantification
rna-seq
updated 4.6 years ago by
swbarnes2
★ 1.3k • written 4.6 years ago by
angel.campos
• 0
1
vote
3
replies
1.6k
views
copy number variation analysis (CNV)
copynumber
plot
visualization
NGS
gene
updated 3.3 years ago by
Ram
▴ 190 • written 3.4 years ago by
sijing.gsj
• 0
1
vote
4
replies
752
views
RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA
gene
RNASeqRData
edgeR
geneontology
17 months ago
faiza
• 0
1
vote
2
replies
703
views
gene ontologies for a set of genes
gene
ontology
2.6 years ago
Bogdan
▴ 670
0
votes
5
replies
6.2k
views
Adding information to the DESeq2 output file (gene name and expression levels for each sample(
deseq2
gene
columns
output
updated 8.4 years ago by
Michael Love
41k • written 8.4 years ago by
amyfm
▴ 10
0
votes
2
replies
970
views
I want to use global test.
gene
r
clst
rpy
globaltest
3.0 years ago
Kim
• 0
0
votes
0
replies
426
views
topGO: how do I retrieve my genes contributing to the GO term enrichment
gene
enrichment
topGO
GO
retrieve
11 months ago
Priya
• 0
0
votes
0
replies
502
views
Gene expression changes in one condition
RNASeq
Gene
ExpressionData
2.4 years ago
AZ
▴ 30
0
votes
2
replies
3.5k
views
Web Scraping From Pubmd (I want to extract gene articles form pubmed abstract and pubmed id i want to extract for number of genes)
cancer
gene
updated 5.1 years ago by
Martin Morgan
25k • written 5.1 years ago by
venkatarao142152
• 0
0
votes
1
reply
274
views
gene aligning reference
geneRecommender
gene
updated 4 months ago by
James W. MacDonald
65k • written 4 months ago by
Gülsüm
• 0
0
votes
2
replies
3.5k
views
Gene body coverage plot
plot
gene
GenomicRanges
Coverage
R
updated 24 months ago by
kent.riemondy
▴ 20 • written 2.1 years ago by
svenbioinf
• 0
0
votes
0
replies
593
views
TFutils database
TFutils
mouse
gene
convert
2.8 years ago
nicocillari
• 0
0
votes
2
replies
499
views
How to find the number of protein-coding genes in each chromosome arm in human?
gene
chromosome
proteincodinggene
11 months ago
Liliian
• 0
0
votes
2
replies
1.5k
views
How to filter the coding protein genes by EnsDb.Hsapiens.v86
EnsDb.Hsapiens.v86
gene
2.0 years ago
beslinail
• 0
0
votes
4
replies
960
views
Fonction of genes/metabolites in a pathway?
gene
metabolite
functionnal annotation
pathways
updated 4.0 years ago by
Kevin Blighe
★ 3.9k • written 4.0 years ago by
emisecherre
• 0
0
votes
3
replies
972
views
PureCN gene LOH very common, amp/del not
PureCN
gene
amplification
deletion
loh
updated 3.9 years ago by
markus.riester
▴ 130 • written 3.9 years ago by
twtoal
▴ 10
0
votes
1
reply
772
views
WGCNA - Network construction and module detection
gene
Clustering
wgcna
flashclust
updated 19 months ago by
andres.firrincieli
▴ 50 • written 19 months ago by
Recep
▴ 20
26 results • Page
1 of 1
Recent ...
Replies
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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michael.s
• 0
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to
James W. MacDonald
65k
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to
Pierre Lindenbaum
▴ 10
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to
Gordon Smyth
50k
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to
Jenny Drnevich
★ 2.0k
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