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gene
•
reset
9
votes
10
replies
2.5k
views
Mapping of GENE symbols into ENTREZ
limma
annotation
Gene
6.4 years ago • updated 5.9 years ago
omarrafiqued
▴ 50
6
votes
7
replies
3.6k
views
GEOquery reading error on Windows.
GEOquery
GEO
Gene
updated 4.2 years ago by
James W. MacDonald
68k • written 4.2 years ago by
Caitlin
▴ 50
6
votes
2
replies
3.2k
views
How to add my own Entrez Gene IDs rather than using the ones from a default package?
annotation
entrez
gene
ids
software error
updated 6.8 years ago by
Gordon Smyth
53k • written 6.8 years ago by
Raito92
▴ 60
5
votes
5
replies
2.9k
views
threeUTRsByTranscript per GENE
GenomicFeatures
Transcript
gene
threeUTRsByTranscript
updated 4.9 years ago by
Dario Strbenac
★ 1.6k • written 6.4 years ago by
amgtech
▴ 10
3
votes
2
replies
4.2k
views
How to Find OMIM id's Corresponding to a List of Gene Symbols in R?
microarray
omim
gene
disorder
updated 10.8 years ago by
Kamil Slowikowski
▴ 30 • written 10.8 years ago by
pankajnarula84
▴ 20
3
votes
3
replies
1.9k
views
Discrepancies between topGO output and input
go
topGO
gene
ontology
enrichment
updated 6.5 years ago by
James W. MacDonald
68k • written 6.5 years ago by
t.bergmann
• 0
3
votes
2
replies
1.0k
views
please resolve the issue
gene
ExpressionData
updated 2.9 years ago by
James W. MacDonald
68k • written 2.9 years ago by
sonal
• 0
2
votes
4
replies
1.6k
views
Joint pathway Analysis using both gene and metabolite data sets
data integration
gene
metabolite
5.9 years ago • updated 5.8 years ago
emisecherre
• 0
2
votes
5
replies
2.0k
views
DESeq2-result files (.csv): Is there a convention for the IDs (e.g. gene names if produced for genes)
deseq2
gene
format
6.5 years ago
miriam.mueller
• 0
1
vote
4
replies
1.7k
views
gene Isoforms quantification using RNA-seq data
gene
isoform
quantification
rna-seq
updated 6.4 years ago by
swbarnes2
★ 1.4k • written 6.4 years ago by
angel.campos
• 0
1
vote
3
replies
2.7k
views
copy number variation analysis (CNV)
copynumber
plot
visualization
NGS
gene
updated 5.1 years ago by
Ram
▴ 220 • written 5.2 years ago by
sijing.gsj
• 0
1
vote
4
replies
1.6k
views
RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA
gene
RNASeqRData
edgeR
geneontology
3.2 years ago
faiza
• 0
1
vote
2
replies
1.2k
views
gene ontologies for a set of genes
gene
ontology
4.4 years ago
Bogdan
▴ 670
0
votes
5
replies
7.4k
views
Adding information to the DESeq2 output file (gene name and expression levels for each sample(
deseq2
gene
columns
output
updated 10.2 years ago by
Michael Love
43k • written 10.2 years ago by
amyfm
▴ 10
0
votes
2
replies
1.6k
views
I want to use global test.
gene
r
clst
rpy
globaltest
4.8 years ago
Kim
• 0
0
votes
0
replies
887
views
topGO: how do I retrieve my genes contributing to the GO term enrichment
gene
enrichment
topGO
GO
retrieve
2.8 years ago
Priya
• 0
0
votes
0
replies
852
views
Gene expression changes in one condition
RNASeq
Gene
ExpressionData
4.2 years ago
AZ
▴ 20
0
votes
2
replies
4.6k
views
Web Scraping From Pubmd (I want to extract gene articles form pubmed abstract and pubmed id i want to extract for number of genes)
cancer
gene
updated 6.9 years ago by
Martin Morgan
25k • written 6.9 years ago by
venkatarao142152
• 0
0
votes
1
reply
690
views
gene aligning reference
geneRecommender
gene
updated 2.2 years ago by
James W. MacDonald
68k • written 2.2 years ago by
Gülsüm
• 0
0
votes
2
replies
6.3k
views
Gene body coverage plot
plot
gene
GenomicRanges
Coverage
R
updated 3.8 years ago by
kent.riemondy
▴ 20 • written 3.9 years ago by
svenbioinf
• 0
0
votes
0
replies
1000
views
TFutils database
TFutils
mouse
gene
convert
4.6 years ago
nicocillari
• 0
0
votes
2
replies
1.7k
views
How to find the number of protein-coding genes in each chromosome arm in human?
gene
chromosome
proteincodinggene
2.8 years ago
Liliian
• 0
0
votes
2
replies
2.7k
views
How to filter the coding protein genes by EnsDb.Hsapiens.v86
EnsDb.Hsapiens.v86
gene
3.9 years ago • updated 3.8 years ago
beslinail
• 0
0
votes
4
replies
1.8k
views
Fonction of genes/metabolites in a pathway?
gene
metabolite
functionnal annotation
pathways
updated 5.8 years ago by
Kevin Blighe
★ 4.0k • written 5.8 years ago by
emisecherre
• 0
0
votes
3
replies
2.0k
views
PureCN gene LOH very common, amp/del not
PureCN
gene
amplification
deletion
loh
updated 5.7 years ago by
markus.riester
▴ 130 • written 5.7 years ago by
twtoal
▴ 10
0
votes
1
reply
1.7k
views
WGCNA - Network construction and module detection
gene
Clustering
wgcna
flashclust
updated 3.4 years ago by
andres.firrincieli
▴ 50 • written 3.4 years ago by
Recep
▴ 20
26 results • Page
1 of 1
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Comment: Are individual-mouse-based statistics possible in CellChat?
by
TikTsossakaas33ocissalpc
• 0
Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…
Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
ja569116
• 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice
by
Gordon Smyth
53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma
by
Gordon Smyth
53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
I updated the above answer today.
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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