Bioconductor Geneanswers

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geneanswers

updated 7.3 years ago by Gordon Smyth 50k • written 7.3 years ago by emiliomastriani • 0

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geneanswers metagenome kegg

updated 7.8 years ago by Guangchuang Yu ★ 1.2k • written 9.4 years ago by francesca.defilippis ▴ 100

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GeneAnswers annotation Arabidopsis GO

8.9 years ago lhuang7 ▴ 50

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goProfiles GeneAnswers goProfiles GeneAnswers

updated 11.2 years ago by Marc Carlson ★ 7.2k • written 11.2 years ago by Jose M Garcia Manteiga ▴ 310

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Network GeneAnswers Network GeneAnswers

11.4 years ago Enrico Ferrero ▴ 10

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Annotation GO oligo GeneAnswers Annotation GO oligo GeneAnswers

11.5 years ago Ingrid Mercier ▴ 60

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GO GeneAnswers GO GeneAnswers

12.0 years ago Zhi Zhang ▴ 70

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GO GeneAnswers GO GeneAnswers

12.5 years ago Guest User ★ 13k

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GO GeneAnswers GO GeneAnswers

updated 12.6 years ago by James W. MacDonald 65k • written 12.6 years ago by Ou, Jianhong ★ 1.3k

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Pathways graph Rredland GeneAnswers Pathways graph Rredland GeneAnswers

13.2 years ago laurent jacob ▴ 100

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Rgraphviz GeneAnswers Rgraphviz GeneAnswers

updated 13.3 years ago by Manca Marco PATH ▴ 340 • written 13.3 years ago by john herbert ▴ 10

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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

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Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

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Scholar to Peter Hickey ▴ 740