Bioconductor Geneanswers

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geneanswers

updated 7.3 years ago by Gordon Smyth 50k • written 7.3 years ago by emiliomastriani • 0

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geneanswers metagenome kegg

updated 7.8 years ago by Guangchuang Yu ★ 1.2k • written 9.4 years ago by francesca.defilippis ▴ 100

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GeneAnswers annotation Arabidopsis GO

8.9 years ago lhuang7 ▴ 50

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goProfiles GeneAnswers goProfiles GeneAnswers

updated 11.2 years ago by Marc Carlson ★ 7.2k • written 11.2 years ago by Jose M Garcia Manteiga ▴ 310

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Network GeneAnswers Network GeneAnswers

11.4 years ago Enrico Ferrero ▴ 10

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Annotation GO oligo GeneAnswers Annotation GO oligo GeneAnswers

11.5 years ago Ingrid Mercier ▴ 60

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GO GeneAnswers GO GeneAnswers

12.0 years ago Zhi Zhang ▴ 70

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GO GeneAnswers GO GeneAnswers

12.6 years ago Guest User ★ 13k

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GO GeneAnswers GO GeneAnswers

updated 12.6 years ago by James W. MacDonald 65k • written 12.6 years ago by Ou, Jianhong ★ 1.3k

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Pathways graph Rredland GeneAnswers Pathways graph Rredland GeneAnswers

13.2 years ago laurent jacob ▴ 100

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Rgraphviz GeneAnswers Rgraphviz GeneAnswers

updated 13.3 years ago by Manca Marco PATH ▴ 340 • written 13.3 years ago by john herbert ▴ 10

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Comment: DESeq2 - dispersion estimation when there is none by WardDeb • 0

Thank you for the pointers, I'll revert back again to the method section of the paper. As for the negative relationship of the estimated di…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0

Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …

Answer: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by Tim Peters ▴ 170

Hi Jose and Russ, Apologies to Jose for not seeing this earlier. Sometimes the loess smoother in the bottom panel will throw this error …

Comment: Trying to use enrichGO by fernanda.backsouza • 0

Sure, I changed it but still NULL G0 <- enrichGO( gene = ortologos_filtrados$Gene.ID, OrgDb = org.Cs.eg.db, keyType = "ENTREZID",…

Answer: limma-voom: Calculate the log-fold change in gene expression within a sample by Gordon Smyth 50k

No, you cannot use residuals to compute logFCs. From the information you give, I guess that you need to add individual-specific condition …

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Answer: DESeq2 - dispersion estimation when there is none

Comment: Cannabis and KEGGgraph

Answer: Cannabis and KEGGgraph

Answer: Differentially expressed genes in monocle pseudotime

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Scholar to Gordon Smyth 50k