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geneanswers
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NCI pathways to graphNEL
Pathways
graph
Rredland
GeneAnswers
Pathways
graph
Rredland
GeneAnswers
13.2 years ago
laurent jacob
▴ 100
0
votes
2
replies
1.2k
views
question about xvfb-run GeneAnswers
GO
GeneAnswers
GO
GeneAnswers
updated 12.6 years ago by
James W. MacDonald
65k • written 12.6 years ago by
Ou, Jianhong
★ 1.3k
0
votes
2
replies
1.1k
views
Gene Ontologies exploration
goProfiles
GeneAnswers
goProfiles
GeneAnswers
updated 11.2 years ago by
Marc Carlson
★ 7.2k • written 11.2 years ago by
Jose M Garcia Manteiga
▴ 310
1
vote
2
replies
1.8k
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GeneAnswer for bacteria metagenomes
geneanswers
metagenome
kegg
updated 7.8 years ago by
Guangchuang Yu
★ 1.2k • written 9.4 years ago by
francesca.defilippis
▴ 100
0
votes
1
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1.3k
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Error running GeneAnswers and Rgraphviz
Rgraphviz
GeneAnswers
Rgraphviz
GeneAnswers
updated 13.3 years ago by
Manca Marco PATH
▴ 340 • written 13.3 years ago by
john herbert
▴ 10
0
votes
0
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831
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categories can not be recognized in Bioconductor/GeneAnswers
geneanswers
updated 7.3 years ago by
Gordon Smyth
50k • written 7.3 years ago by
emiliomastriani
• 0
0
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0
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1.4k
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Re: GenesAnswers for Arabidopsis!
GeneAnswers
annotation
Arabidopsis
GO
8.9 years ago
lhuang7
▴ 50
0
votes
0
replies
854
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Pie chart
GO
GeneAnswers
GO
GeneAnswers
12.6 years ago
Guest User
★ 13k
0
votes
0
replies
908
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question about getGOList in GeneAnswers
GO
GeneAnswers
GO
GeneAnswers
12.0 years ago
Zhi Zhang
▴ 70
0
votes
0
replies
956
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help ith GeneAnswers / annotation package
Annotation
GO
oligo
GeneAnswers
Annotation
GO
oligo
GeneAnswers
11.5 years ago
Ingrid Mercier
▴ 60
0
votes
0
replies
948
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[Geneanswers] About the meaning of colours in networks
Network
GeneAnswers
Network
GeneAnswers
11.4 years ago
Enrico Ferrero
▴ 10
11 results • Page
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
Answer: Log-cpm values from limma
Answer: Log-cpm values from limma
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