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Showing :
genefilter
•
reset
1
vote
3
replies
569
views
DESeq: relaxing gene filtering thresholds increases mean-Sd correlation, but recovers many important genes
metaanalysis
meanSd
genefilter
DESeq2
9 months ago
Ndimensional
▴ 20
1
vote
3
replies
2.8k
views
DESeq2/genefilter compatibility with R 4.2.2
DESeq2
genefilter
17 months ago
Morgane
▴ 10
1
vote
1
reply
638
views
Weight Array Quality before of after applying variance filtering?
limma
arrays
genefilter
updated 20 months ago by
James W. MacDonald
65k • written 20 months ago by
jacorvar
▴ 40
0
votes
0
replies
646
views
Cannot Install genefilter
genefilter
20 months ago
Francis
• 0
10
votes
23
replies
13k
views
Macbook M1 install genefilter failed
DESeq2
m1
macbook
genefilter
2.7 years ago • updated 16 months ago
soda
▴ 80
0
votes
1
reply
650
views
collided row names in heatmap.2
heatmap.2
genefilter
deseq2
updated 2.6 years ago by
James W. MacDonald
65k • written 2.6 years ago by
Elham
• 0
0
votes
2
replies
1.2k
views
genefilter not available for R v4.1/arm64
DESeq2
genefilter
2.7 years ago
jeremymsimon
▴ 20
0
votes
1
reply
682
views
Error using simpleaffy
software error
simpleaffy
genefilter
updated 4.6 years ago by
James W. MacDonald
65k • written 4.6 years ago by
jordiroval
• 0
9
votes
10
replies
2.0k
views
Any efficient workaround to identify highly variable genes in Affymetrix microarray expression data?
limma
microarray
genefilter
deseq2
4.8 years ago
Jurat Shahidin
▴ 80
0
votes
6
replies
1.8k
views
Save ExpressionSet to csv file with columns and rows headers
microarray
genefilter
updated 4.8 years ago by
James W. MacDonald
65k • written 4.8 years ago by
malik.yousef
▴ 10
0
votes
1
reply
1.4k
views
genefilter Package not available for R 3.5.2
genefilter
5.2 years ago
radhikasundar520
• 0
0
votes
1
reply
2.1k
views
Can not install packages
ballgown
genefilter
RskittleBrewer
updated 5.4 years ago by
Mike Smith
★ 6.5k • written 5.4 years ago by
Mithil Gaikwad
• 0
0
votes
5
replies
1.8k
views
Annotating Expression Set for GSVA w/ Brainarray Human Gene 1.1 ST Array CDF
bioconductor
brainarray
genefilter
oligo
updated 5.8 years ago by
James W. MacDonald
65k • written 5.8 years ago by
kdyson
• 0
0
votes
1
reply
1.4k
views
Unable to compile genefilter package
bioconductor
genefilter
compile
updated 6.1 years ago by
James W. MacDonald
65k • written 6.1 years ago by
joanne.kite
• 0
0
votes
3
replies
1.8k
views
error in filtering genes with rowVars(gexpr(bg_chrX)) >1
genefilter
ballgown
updated 6.2 years ago by
importantrubbish
• 0 • written 6.6 years ago by
fubeide
• 0
0
votes
1
reply
1.7k
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, ?
deseq2
filter
genefilter
updated 6.4 years ago by
Michael Love
41k • written 6.4 years ago by
Björn
• 0
1
vote
4
replies
1.8k
views
cran check shows that genefilter is not available
genefilter
6.4 years ago
jinkaixiu
▴ 10
1
vote
3
replies
1.4k
views
Selecting genes that best separate between two groups
limma
genefilter
ttest
clustering
TPM
6.5 years ago
lirongrossmann
▴ 80
1
vote
5
replies
1.1k
views
error when trying to apply the specific gene filter.
genefilter
6.7 years ago
DataFanatic
▴ 10
6
votes
5
replies
14k
views
Installation of package DESeq2
deseq2
rcurl
annotate
genefilter
geneplotter
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
Rémi Willamme
▴ 10
1
vote
4
replies
1.4k
views
Error in the package of "genefilter" "nsFilter"
genefilter
updated 7.5 years ago by
James W. MacDonald
65k • written 7.5 years ago by
Lian Liu
▴ 20
3
votes
5
replies
2.2k
views
Fail to install "AnnotationHub"
software error
annotation
genefilter
pd.hta.2.0
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
Lian Liu
▴ 20
3
votes
1
reply
1.0k
views
Is it valid to use only genes of interest before eBayes step in limma?
limma
genefilter
updated 7.7 years ago by
Aaron Lun
★ 28k • written 7.7 years ago by
minabashir
• 0
6
votes
6
replies
1.8k
views
genefilter filtered out 60% of the original genes?
genefilter
edgeR
updated 7.9 years ago by
Nikos Ignatiadis
▴ 180 • written 7.9 years ago by
cafelumiere12
▴ 20
1
vote
1
reply
1.5k
views
Error using nsFilter() Error in (function (classes, fdef, mtable) unable to find an inherited method for function columns for signature function
genefilter
7.9 years ago
Lucy
• 0
2
votes
1
reply
1.5k
views
Filtering array data with nsFilter
genefilter
nsFilter
updated 7.9 years ago by
Gordon Smyth
50k • written 7.9 years ago by
emarram1
• 0
0
votes
1
reply
941
views
Really weird results when I filter this new data that I have, script has worked on two previous data sets.
microarray
limma
genefilter
updated 8.1 years ago by
James W. MacDonald
65k • written 8.1 years ago by
hakimelakhrass
• 0
0
votes
1
reply
1.2k
views
nsFilter not filtering out all of the normgene->exon.
genefilter
affymetrix microarrays
updated 8.1 years ago by
James W. MacDonald
65k • written 8.1 years ago by
hakimelakhrass
• 0
2
votes
2
replies
1.2k
views
I'm looking for a filtering method that it does't use genewise variances
genefilter
liimma
microarray
updated 8.3 years ago by
Wolfgang Huber
★ 13k • written 8.3 years ago by
Shamim Sarhadi
▴ 20
4
votes
4
replies
2.1k
views
Suggestions for non-specific filtering criteria with limma
limma
genefilter
updated 8.3 years ago by
Wolfgang Huber
★ 13k • written 8.3 years ago by
rvinisko
▴ 10
4
votes
4
replies
2.5k
views
DEXSeq and Independent filtering
dexseq
deseq2
genefilter
updated 8.4 years ago by
Wolfgang Huber
★ 13k • written 8.4 years ago by
Joseph Bundy
▴ 20
2
votes
12
replies
2.3k
views
I want to order genes in GO groups
gene ontology
genefilter
updated 8.5 years ago by
b.nota
▴ 360 • written 8.5 years ago by
kanacska
▴ 10
0
votes
2
replies
2.9k
views
Error with oligo: environmentIsLocked
oligo
bioconductor
genefilter
updated 8.6 years ago by
James W. MacDonald
65k • written 8.6 years ago by
Claudia
▴ 10
0
votes
1
reply
1.5k
views
simpleaffy segmentation fault
Survival
probe
genefilter
affy
affyio
Survival
probe
genefilter
affy
affyio
updated 8.9 years ago by
vlagani
• 0 • written 17.2 years ago by
Sucheta Tripathy
▴ 170
2
votes
7
replies
1.6k
views
why genefilter does not work for me ?
R
microarray
genefilter
9.1 years ago
Nemo
▴ 80
4
votes
4
replies
2.6k
views
Non-specific filtering methodogies for ExpressionSet in R/Bioconductor
genefilter
R
bioconductor
differential gene expression
updated 9.2 years ago by
Gordon Smyth
50k • written 9.2 years ago by
svlachavas
▴ 830
7
votes
5
replies
2.0k
views
Adjusted P values
limma
genefilter
updated 9.4 years ago by
Gordon Smyth
50k • written 9.4 years ago by
kaushal Raj Chaudhary
▴ 10
2
votes
4
replies
1.6k
views
filter.log in nsFilter function (package genefilter) gives null value
genefilter
updated 9.5 years ago by
James W. MacDonald
65k • written 9.5 years ago by
kaushal Raj Chaudhary
▴ 10
1
vote
3
replies
8.9k
views
genefilter installation error
genefilter
genefilter
updated 9.6 years ago by
Cherif Ben Hamda
▴ 150 • written 9.6 years ago by
Subinoy Biswas
▴ 10
0
votes
1
reply
1.1k
views
selection of probes, probesets mapping to the same gene
genefilter
genefilter
updated 9.7 years ago by
Wolfgang Huber
★ 13k • written 9.7 years ago by
carol white
▴ 680
0
votes
2
replies
1.3k
views
Fwd: adjusted P-values
Cancer
genefilter
Cancer
genefilter
updated 9.9 years ago by
Tim Triche
★ 4.2k • written 9.9 years ago by
Martin Rijlaarsdam
▴ 190
0
votes
0
replies
886
views
adjusted P-values
genefilter
genefilter
9.9 years ago
Guest User
★ 13k
0
votes
1
reply
3.9k
views
error in installing \"genefilter\"
genefilter
genefilter
updated 9.9 years ago by
James W. MacDonald
65k • written 9.9 years ago by
Guest User
★ 13k
1
vote
1
reply
2.0k
views
Rosetta Resolver-like error-weighted ANOVAs in Bioconductor
Microarray
genefilter
affy
Microarray
genefilter
affy
updated 10.1 years ago by
Ryan C. Thompson
★ 7.9k • written 10.1 years ago by
Ida Hatoum
▴ 10
0
votes
4
replies
1.9k
views
genefilter kOverA filter by range
genefilter
genefilter
updated 10.2 years ago by
James W. MacDonald
65k • written 10.2 years ago by
Kristina M Fontanez
▴ 220
0
votes
1
reply
1.1k
views
Fwd: [devteam-bioc] information about genefilter package
Microarray
genefilter
limma
Microarray
genefilter
limma
updated 10.4 years ago by
James W. MacDonald
65k • written 10.4 years ago by
Hervé Pagès
16k
0
votes
3
replies
2.0k
views
Problem installing genefilter (Ubuntu 12.04; Bioconductor v2.12)
genefilter
genefilter
updated 10.7 years ago by
James W. MacDonald
65k • written 10.7 years ago by
Guest User
★ 13k
0
votes
9
replies
1.5k
views
Error in calculating P-values with Genefilter function
genefilter
genefilter
updated 10.8 years ago by
James W. MacDonald
65k • written 10.8 years ago by
Guest User
★ 13k
0
votes
2
replies
2.4k
views
[R] Select single probe-set with median expression from multiple probe-sets corresponding to same gene -AFFY
GO
probe
Biobase
genefilter
GO
probe
Biobase
genefilter
updated 11.0 years ago by
Martin Morgan
25k • written 11.0 years ago by
Atul Kakrana
▴ 30
0
votes
0
replies
934
views
analysis of HuGene2.0-st array affymetrix -aroma package
genefilter
genefilter
11.0 years ago
Andreia Fonseca
▴ 810
50 results • Page
1 of 1
Recent ...
Replies
Comment: error when using M-values in ChAMP
by
hortenseguillaume96
• 0
Hello Tian, I'd like to get the M-values matrix so that I can carry out a linear regression study. However, when I apply the champ.load fu…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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