Showing : genefilter • reset
10
votes
23
replies
13k
views
Macbook M1 install genefilter failed
DESeq2 m1 macbook genefilter
2.7 years ago • updated 17 months ago soda ▴ 80
2
votes
12
replies
2.4k
views
I want to order genes in GO groups
gene ontology genefilter
updated 8.6 years ago by ▴ 360 • written 8.6 years ago by ▴ 10
0
votes
12
replies
1.9k
views
Some Genefilter questions
GO Survival cdf genefilter geneplotter tkWidgets affy affydata widgetTools gcrma affyPLM
updated 17.4 years ago by ★ 5.5k • written 17.4 years ago by ▴ 460
0
votes
11
replies
2.7k
views
trouble hacking plotPCA
GO Survival Biobase genefilter affy affydata graph limma gcrma matchprobes affyPLM RBGL
updated 17.4 years ago by ▴ 10 • written 17.4 years ago by ★ 2.2k
0
votes
11
replies
1.7k
views
'recursive default argument' error in GOENTREZID2GO
GO Biobase genefilter graph Category GO Biobase genefilter graph Category
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ▴ 260
0
votes
11
replies
1.7k
views
Nonspecific filtering on Human Gene ST 1.0 Arrays
genefilter genefilter
updated 14.4 years ago by 25k • written 14.4 years ago by ▴ 840
9
votes
10
replies
2.1k
views
Any efficient workaround to identify highly variable genes in Affymetrix microarray expression data?
limma microarray genefilter deseq2
4.8 years ago Jurat Shahidin ▴ 80
0
votes
10
replies
1.9k
views
Some Genefilter questions
Normalization Survival Cancer cdf genefilter geneplotter affy affydata widgetTools gcrma
updated 17.4 years ago by ▴ 460 • written 17.4 years ago by ▴ 70
0
votes
9
replies
1.5k
views
Error in calculating P-values with Genefilter function
genefilter genefilter
updated 10.9 years ago by 65k • written 10.9 years ago by ★ 13k
0
votes
9
replies
1.8k
views
problem with function rma
Normalization rat2302 cdf genefilter affy simpleaffy affyQCReport affyio Normalization
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ▴ 80
0
votes
8
replies
3.2k
views
Reading Agilent files using read.maimages
Survival DynDoc genefilter tkWidgets affy vsn marray convert ArrayExpress Survival affy
updated 16.7 years ago by ▴ 20 • written 16.7 years ago by ▴ 100
0
votes
8
replies
2.1k
views
genefiltering before or after the normalization?
Normalization genefilter Normalization genefilter
updated 15.8 years ago by ★ 2.0k • written 15.8 years ago by ▴ 340
0
votes
8
replies
1.6k
views
oligo on R 2.4.1?
GO Survival annotate genefilter affy affydata matchprobes affyQCReport affyio oligo GO
updated 17.2 years ago by ★ 7.4k • written 17.2 years ago by ★ 2.2k
2
votes
7
replies
1.6k
views
why genefilter does not work for me ?
R microarray genefilter
9.2 years ago Nemo ▴ 80
0
votes
7
replies
1.1k
views
Gene filtering
genefilter genefilter
updated 19.2 years ago by ★ 1.8k • written 19.2 years ago by ▴ 310
0
votes
6
replies
1.6k
views
GOstats and custom annotation problem
Annotation GO annotate genefilter graph AnnBuilder RBGL GOstats Category Annotation GO
updated 17.3 years ago by 21k • written 17.3 years ago by ▴ 310
0
votes
6
replies
1.9k
views
Save ExpressionSet to csv file with columns and rows headers
microarray genefilter
updated 4.9 years ago by 65k • written 4.9 years ago by ▴ 10
6
votes
6
replies
1.8k
views
genefilter filtered out 60% of the original genes?
genefilter edgeR
updated 8.0 years ago by ▴ 180 • written 8.0 years ago by ▴ 20
0
votes
6
replies
1.9k
views
ReadAffy Error: new versions causing problems?
genefilter gcrma matchprobes simpleaffy affyio genefilter gcrma matchprobes simpleaffy
updated 16.9 years ago by ▴ 20 • written 16.9 years ago by ▴ 200
0
votes
6
replies
3.3k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
updated 16.7 years ago by ▴ 220 • written 16.7 years ago by ★ 2.2k
0
votes
6
replies
1.9k
views
2 way anova in Bioconductor
GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics GO genefilter
updated 12.8 years ago by ★ 2.0k • written 12.8 years ago by ▴ 110
0
votes
5
replies
1.8k
views
Annotating Expression Set for GSVA w/ Brainarray Human Gene 1.1 ST Array CDF
bioconductor brainarray genefilter oligo
updated 5.9 years ago by 65k • written 5.9 years ago by • 0
6
votes
5
replies
14k
views
Installation of package DESeq2
deseq2 rcurl annotate genefilter geneplotter
updated 7.3 years ago by 25k • written 7.3 years ago by ▴ 10
0
votes
5
replies
1.6k
views
getBioC v1.2.22 & [R] v1.6.2
annotate edd genefilter geneplotter rhdf5 multtest ROC tkWidgets reposTools affy vsn
updated 21.1 years ago by ★ 3.9k • written 21.1 years ago by ▴ 70
0
votes
5
replies
1.3k
views
data() function problem
genefilter genefilter
21.0 years ago ZRG Zeren Gao ▴ 30
0
votes
5
replies
1.9k
views
affyPLM - cant plot chip pseudo image
cdf genefilter affy affydata affyPLM simpleaffy affyio cdf genefilter affy affydata
updated 16.8 years ago by 65k • written 16.8 years ago by ▴ 50
0
votes
5
replies
961
views
Failing to install genefilter-1.12.0
genefilter genefilter
updated 17.1 years ago by ★ 7.4k • written 17.1 years ago by ★ 4.3k
0
votes
5
replies
1.3k
views
Error from using featureFilter (genefilter package)
genefilter genefilter
updated 14.9 years ago by 25k • written 14.9 years ago by ▴ 80
7
votes
5
replies
2.0k
views
Adjusted P values
limma genefilter
updated 9.4 years ago by 50k • written 9.5 years ago by ▴ 10
0
votes
5
replies
1.5k
views
genefilter displaying the expression set
genefilter genefilter
15.2 years ago dhaarini s ▴ 70
0
votes
5
replies
1.6k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 17.5 years ago by ▴ 20 • written 17.5 years ago by ★ 2.2k
0
votes
5
replies
1.3k
views
Genefilter parameters for mouse 430 2
Cancer mouse4302 genefilter limma gcrma Cancer mouse4302 genefilter limma gcrma
updated 16.1 years ago by 65k • written 16.1 years ago by ★ 2.0k
3
votes
5
replies
2.2k
views
Fail to install "AnnotationHub"
software error annotation genefilter pd.hta.2.0
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 20
1
vote
5
replies
1.1k
views
error when trying to apply the specific gene filter.
genefilter
6.8 years ago • updated 6.7 years ago DataFanatic ▴ 10
0
votes
4
replies
1.9k
views
installation problem
Ruuid genefilter rhdf5 multtest affy graph Rgraphviz RBGL Ruuid genefilter rhdf5 affy
updated 20.6 years ago by 6.7k • written 20.6 years ago by ▴ 30
0
votes
4
replies
1.9k
views
genefilter kOverA filter by range
genefilter genefilter
updated 10.2 years ago by 65k • written 10.2 years ago by ▴ 220
1
vote
4
replies
1.9k
views
cran check shows that genefilter is not available
genefilter
6.4 years ago jinkaixiu ▴ 10
1
vote
4
replies
1.4k
views
Error in the package of "genefilter" "nsFilter"
genefilter
updated 7.5 years ago by 65k • written 7.5 years ago by ▴ 20
0
votes
4
replies
1.3k
views
problems rma() with mouse exon affy data in exonmap package
Survival cdf genefilter affy simpleaffy plier exonmap Survival cdf genefilter affy
updated 16.7 years ago by 65k • written 16.7 years ago by ▴ 20
0
votes
4
replies
1.2k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest reposTools affy affydata graph GO
updated 17.5 years ago by 25k • written 17.5 years ago by ★ 2.2k
0
votes
4
replies
1.4k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 16.6 years ago by ▴ 230 • written 16.6 years ago by ▴ 110
2
votes
4
replies
1.7k
views
filter.log in nsFilter function (package genefilter) gives null value
genefilter
updated 9.5 years ago by 65k • written 9.5 years ago by ▴ 10
0
votes
4
replies
1.7k
views
how to unlock a package environment
Annotation Arabidopsis thaliana ath1121501 genefilter Annotation Arabidopsis thaliana
updated 14.6 years ago by ★ 7.2k • written 14.6 years ago by ▴ 170
4
votes
4
replies
2.1k
views
Suggestions for non-specific filtering criteria with limma
limma genefilter
updated 8.3 years ago by ★ 13k • written 8.4 years ago by ▴ 10
0
votes
4
replies
1.1k
views
Does factDesign deal with two-color data?
Microarray genefilter affy factDesign Microarray genefilter affy factDesign
updated 14.9 years ago by ▴ 70 • written 14.9 years ago by ▴ 240
4
votes
4
replies
2.6k
views
DEXSeq and Independent filtering
dexseq deseq2 genefilter
updated 8.4 years ago by ★ 13k • written 8.4 years ago by ▴ 20
4
votes
4
replies
2.6k
views
Non-specific filtering methodogies for ExpressionSet in R/Bioconductor
genefilter R bioconductor differential gene expression
updated 9.3 years ago by 50k • written 9.3 years ago by ▴ 830
0
votes
4
replies
1.2k
views
Using genefilter
genefilter affy limma genefilter affy limma
15.8 years ago Nathan.Watson-Haigh@csiro.au ▴ 210
0
votes
4
replies
2.2k
views
error while loading the genefilter package [R 2.8.1. on Mac OSX 10.5.6]
genefilter genefilter
updated 15.0 years ago by ★ 1.6k • written 15.0 years ago by ▴ 390
0
votes
3
replies
3.3k
views
Installing genefilter
Microarray genefilter multtest Microarray genefilter multtest
updated 19.2 years ago by ▴ 300 • written 19.2 years ago by ▴ 20
50 results • Page 1 of 1
Recent ...
Replies
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Awards • All
Scholar to Robert Castelo ★ 3.2k
Popular Question to James W. MacDonald 65k
Popular Question to shepherl 3.8k
Popular Question to BioinfGuru ▴ 30
Popular Question to Gordon Smyth 50k
Locations • All
Ireland, 18 minutes ago
France, 19 minutes ago
WEHI, Melbourne, Australia, 1 hour ago
Ireland, 1 hour ago
Italy, 1 hour ago
Traffic: 453 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6