Showing : genefilter • reset
10
votes
23
replies
11k
views
Macbook M1 install genefilter failed
DESeq2 m1 macbook genefilter
2.2 years ago • updated 10 months ago soda ▴ 80
2
votes
12
replies
2.0k
views
I want to order genes in GO groups
gene ontology genefilter
updated 8.0 years ago by ▴ 360 • written 8.0 years ago by ▴ 10
0
votes
12
replies
1.6k
views
Some Genefilter questions
GO Survival cdf genefilter geneplotter tkWidgets affy affydata widgetTools gcrma affyPLM
updated 16.8 years ago by ★ 5.5k • written 16.8 years ago by ▴ 460
0
votes
11
replies
2.3k
views
trouble hacking plotPCA
GO Survival Biobase genefilter affy affydata graph limma gcrma matchprobes affyPLM RBGL
updated 16.8 years ago by ▴ 10 • written 16.8 years ago by ★ 2.2k
0
votes
11
replies
1.4k
views
'recursive default argument' error in GOENTREZID2GO
GO Biobase genefilter graph Category GO Biobase genefilter graph Category
updated 16.3 years ago by ★ 7.4k • written 16.3 years ago by ▴ 260
0
votes
11
replies
1.4k
views
Nonspecific filtering on Human Gene ST 1.0 Arrays
genefilter genefilter
updated 13.8 years ago by 25k • written 13.8 years ago by ▴ 840
9
votes
10
replies
1.7k
views
Any efficient workaround to identify highly variable genes in Affymetrix microarray expression data?
limma microarray genefilter deseq2
4.3 years ago Jurat Shahidin ▴ 80
0
votes
10
replies
1.6k
views
Some Genefilter questions
Normalization Survival Cancer cdf genefilter geneplotter affy affydata widgetTools gcrma
updated 16.8 years ago by ▴ 460 • written 16.8 years ago by ▴ 70
0
votes
9
replies
1.4k
views
Error in calculating P-values with Genefilter function
genefilter genefilter
updated 10.3 years ago by 63k • written 10.3 years ago by ★ 12k
0
votes
9
replies
1.5k
views
problem with function rma
Normalization rat2302 cdf genefilter affy simpleaffy affyQCReport affyio Normalization
updated 16.3 years ago by ★ 7.4k • written 16.3 years ago by ▴ 80
0
votes
8
replies
2.9k
views
Reading Agilent files using read.maimages
Survival DynDoc genefilter tkWidgets affy vsn marray convert ArrayExpress Survival affy
updated 16.1 years ago by ▴ 20 • written 16.1 years ago by ▴ 100
0
votes
8
replies
1.9k
views
genefiltering before or after the normalization?
Normalization genefilter Normalization genefilter
updated 15.2 years ago by ★ 2.0k • written 15.2 years ago by ▴ 340
0
votes
8
replies
1.4k
views
oligo on R 2.4.1?
GO Survival annotate genefilter affy affydata matchprobes affyQCReport affyio oligo GO
updated 16.6 years ago by ★ 7.4k • written 16.6 years ago by ★ 2.2k
2
votes
7
replies
1.5k
views
why genefilter does not work for me ?
R microarray genefilter
8.6 years ago Nemo ▴ 80
0
votes
7
replies
887
views
Gene filtering
genefilter genefilter
updated 18.6 years ago by ★ 1.8k • written 18.6 years ago by ▴ 310
0
votes
6
replies
1.3k
views
GOstats and custom annotation problem
Annotation GO annotate genefilter graph AnnBuilder RBGL GOstats Category Annotation GO
updated 16.7 years ago by 21k • written 16.7 years ago by ▴ 310
0
votes
6
replies
1.5k
views
Save ExpressionSet to csv file with columns and rows headers
microarray genefilter
updated 4.3 years ago by 63k • written 4.3 years ago by ▴ 10
6
votes
6
replies
1.6k
views
genefilter filtered out 60% of the original genes?
genefilter edgeR
updated 7.4 years ago by ▴ 180 • written 7.4 years ago by ▴ 20
0
votes
6
replies
1.7k
views
ReadAffy Error: new versions causing problems?
genefilter gcrma matchprobes simpleaffy affyio genefilter gcrma matchprobes simpleaffy
updated 16.3 years ago by ▴ 20 • written 16.3 years ago by ▴ 200
0
votes
6
replies
3.0k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
updated 16.1 years ago by ▴ 220 • written 16.1 years ago by ★ 2.2k
0
votes
6
replies
1.7k
views
2 way anova in Bioconductor
GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics GO genefilter
updated 12.2 years ago by ★ 2.0k • written 12.2 years ago by ▴ 110
0
votes
5
replies
1.5k
views
Annotating Expression Set for GSVA w/ Brainarray Human Gene 1.1 ST Array CDF
bioconductor brainarray genefilter oligo
updated 5.3 years ago by 63k • written 5.3 years ago by • 0
6
votes
5
replies
14k
views
Installation of package DESeq2
deseq2 rcurl annotate genefilter geneplotter
updated 6.7 years ago by 25k • written 6.7 years ago by ▴ 10
0
votes
5
replies
1.4k
views
getBioC v1.2.22 & [R] v1.6.2
annotate edd genefilter geneplotter rhdf5 multtest ROC tkWidgets reposTools affy vsn
updated 20.5 years ago by ★ 3.9k • written 20.5 years ago by ▴ 70
0
votes
5
replies
1.1k
views
data() function problem
genefilter genefilter
20.4 years ago ZRG Zeren Gao ▴ 30
0
votes
5
replies
1.7k
views
affyPLM - cant plot chip pseudo image
cdf genefilter affy affydata affyPLM simpleaffy affyio cdf genefilter affy affydata
updated 16.2 years ago by 63k • written 16.2 years ago by ▴ 50
0
votes
5
replies
837
views
Failing to install genefilter-1.12.0
genefilter genefilter
updated 16.5 years ago by ★ 7.4k • written 16.5 years ago by ★ 4.3k
0
votes
5
replies
1.2k
views
Error from using featureFilter (genefilter package)
genefilter genefilter
updated 14.4 years ago by 25k • written 14.4 years ago by ▴ 80
7
votes
5
replies
1.7k
views
Adjusted P values
limma genefilter
updated 8.9 years ago by 48k • written 8.9 years ago by ▴ 10
0
votes
5
replies
1.2k
views
genefilter displaying the expression set
genefilter genefilter
14.6 years ago dhaarini s ▴ 70
0
votes
5
replies
1.4k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 16.9 years ago by ▴ 20 • written 16.9 years ago by ★ 2.2k
0
votes
5
replies
1.2k
views
Genefilter parameters for mouse 430 2
Cancer mouse4302 genefilter limma gcrma Cancer mouse4302 genefilter limma gcrma
updated 15.5 years ago by 63k • written 15.5 years ago by ★ 2.0k
3
votes
5
replies
2.0k
views
Fail to install "AnnotationHub"
software error annotation genefilter pd.hta.2.0
updated 7.0 years ago by 25k • written 7.0 years ago by ▴ 20
1
vote
5
replies
993
views
error when trying to apply the specific gene filter.
genefilter
6.2 years ago • updated 6.1 years ago DataFanatic ▴ 10
0
votes
4
replies
1.7k
views
installation problem
Ruuid genefilter rhdf5 multtest affy graph Rgraphviz RBGL Ruuid genefilter rhdf5 affy
updated 20.0 years ago by 6.7k • written 20.0 years ago by ▴ 30
0
votes
4
replies
1.8k
views
genefilter kOverA filter by range
genefilter genefilter
updated 9.7 years ago by 63k • written 9.7 years ago by ▴ 220
1
vote
4
replies
1.6k
views
cran check shows that genefilter is not available
genefilter
5.8 years ago jinkaixiu ▴ 10
1
vote
4
replies
1.2k
views
Error in the package of "genefilter" "nsFilter"
genefilter
updated 6.9 years ago by 63k • written 6.9 years ago by ▴ 20
0
votes
4
replies
1.1k
views
problems rma() with mouse exon affy data in exonmap package
Survival cdf genefilter affy simpleaffy plier exonmap Survival cdf genefilter affy
updated 16.1 years ago by 63k • written 16.1 years ago by ▴ 20
0
votes
4
replies
1.1k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest reposTools affy affydata graph GO
updated 16.9 years ago by 25k • written 16.9 years ago by ★ 2.2k
0
votes
4
replies
1.2k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 16.0 years ago by ▴ 230 • written 16.0 years ago by ▴ 110
2
votes
4
replies
1.5k
views
filter.log in nsFilter function (package genefilter) gives null value
genefilter
updated 9.0 years ago by 63k • written 9.0 years ago by ▴ 10
0
votes
4
replies
1.5k
views
how to unlock a package environment
Annotation Arabidopsis thaliana ath1121501 genefilter Annotation Arabidopsis thaliana
updated 14.0 years ago by ★ 7.2k • written 14.0 years ago by ▴ 170
4
votes
4
replies
1.9k
views
Suggestions for non-specific filtering criteria with limma
limma genefilter
updated 7.7 years ago by 13k • written 7.8 years ago by ▴ 10
0
votes
4
replies
937
views
Does factDesign deal with two-color data?
Microarray genefilter affy factDesign Microarray genefilter affy factDesign
updated 14.3 years ago by ▴ 70 • written 14.3 years ago by ▴ 240
4
votes
4
replies
2.3k
views
DEXSeq and Independent filtering
dexseq deseq2 genefilter
updated 7.8 years ago by 13k • written 7.8 years ago by ▴ 20
4
votes
4
replies
2.4k
views
Non-specific filtering methodogies for ExpressionSet in R/Bioconductor
genefilter R bioconductor differential gene expression
updated 8.7 years ago by 48k • written 8.7 years ago by ▴ 810
0
votes
4
replies
1.1k
views
Using genefilter
genefilter affy limma genefilter affy limma
15.3 years ago Nathan.Watson-Haigh@csiro.au ▴ 210
0
votes
4
replies
2.0k
views
error while loading the genefilter package [R 2.8.1. on Mac OSX 10.5.6]
genefilter genefilter
updated 14.4 years ago by 1.6k • written 14.4 years ago by ▴ 390
0
votes
3
replies
3.1k
views
Installing genefilter
Microarray genefilter multtest Microarray genefilter multtest
updated 18.6 years ago by ▴ 300 • written 18.6 years ago by ▴ 20
50 results • Page 1 of 1
Recent ...
Replies
Comment: List of Deprecated Packages for Bioc3.18 by Hervé Pagès 16k
Also the source package is not available [in BioC 3.17](https://bioconductor.org/packages/3.17/CancerInSilico) which means that the package…
Answer: DelayedArray::read_sparse_block by Hervé Pagès 16k
Hi Koki, Sorry again for the slow response. `read_sparse_block()` has been around for years. It's a generic function defined in the *…
Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k
Sorry for missing that one too. When writting blocks to an HDF5 file, the `write_block()` method for HDF5RealizationSink or TENxRealizatio…
Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k
Hi Koki, sorry for not seeing this before. > will SparseArraySeed in DelayedArray be replaced by this new sparse array format? Yes it wil…
Comment: Manual creation of qPCRset does not work by Ed Siefker ▴ 230
Thanks! This works for me.
Votes
Comment: List of Deprecated Packages for Bioc3.18
Answer: Manual creation of qPCRset does not work
Answer: MDS plot edgeR
A: legend with gradient in ComplexHeatmap
Comment: comparing contrasts in edger/lima using makeContrasts function
Awards • All
Popular Question to sohail.mbio ▴ 10
Popular Question to komal.rathi ▴ 110
Popular Question to Levi Waldron 1.1k
Popular Question to Lucas Schiffer ▴ 240
Popular Question to Ed Siefker ▴ 230
Locations • All
United States, 4 minutes ago
Belgium, 17 minutes ago
Seattle, WA, United States, 26 minutes ago
The city by the bay, 49 minutes ago
United Kingdom, 1 hour ago
Traffic: 613 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6