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Comment: error in package GenVisR while installing
by
堃
• 0
Package ‘FField’ was removed from the CRAN repository.[enter link description here][1] I installed FField by using remotes::install_github…
Comment: DESeq 2 failes to load
by
Ruggero
• 0
This solved the error, in case someone else is having compilation errors from installing RSQllite: install.packages('RSQLite', repos='http…
Comment: pathview says my nonmodel species is unknown: "species invalid"
by
Guido Hooiveld
★ 3.3k
A while ago a faced the same for another non-model organism. I was able to get it working using a 'hack'. This hack is nothing more than ma…
Comment: pathview says my nonmodel species is unknown: "species invalid"
by
James W. MacDonald
60k
Ah, I get it. So what happens if you provide a species code (which can be an actual species code or the genus and species or even a common …
Comment: pathview says my nonmodel species is unknown: "species invalid"
by
nute11a
• 0
Hi James, thanks so much for your response! I actually did: ``` test <- pathview(gene.data=geneList, pathway.id="00440", species="ppyr") ``…
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A: conceptual question about FDR, FDR adjusted p-value and q-value
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