Bioconductor Geneontology

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1.1k

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GO.db Annotation Clusterprofile GeneOntology

updated 3.9 years ago by Basti ▴ 780 • written 3.9 years ago by MOHAMMAD • 0

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807

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Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology

updated 11 months ago by Michael Love 43k • written 11 months ago by Filipe • 0

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1.1k

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GOstats Go.db GeneOntology

3.9 years ago MOHAMMAD • 0

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1.2k

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microRNA gene RNASeqRData edgeR geneontology

2.3 years ago faiza • 0

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1.8k

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topGO enrichmentanalysis geneontology

updated 4.0 years ago by Lluís Revilla Sancho ▴ 760 • written 4.0 years ago by Aini • 0

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2.6k

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Annotation GeneOntology topGO GO

updated 2.6 years ago by James W. MacDonald 68k • written 2.6 years ago by Raito92 ▴ 60

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2.5k

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rnaseq rnaseqGene geneontology

updated 2.2 years ago by James W. MacDonald 68k • written 2.2 years ago by acram • 0

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8.3k

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clusterprofiler geneontology

updated 7.3 years ago by thokall ▴ 160 • written 7.3 years ago by giuseppe0525 • 0

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723

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GO GeneOntology LocusIDtogeneIDconversion

2.4 years ago BioinFo.X • 0

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1.1k

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geneontology R go semantic similarity

updated 8.1 years ago by Valerie Obenchain ★ 6.8k • written 8.1 years ago by manasa22.reddy • 0

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Comment: GSVA on RNAseq data by Robert Castelo ★ 3.4k

Hi Bob, I have not investigated whether a particular unit of expression works better than others, but using logTPM or logCPM units of expr…

Answer: Store Matrix in DataFrame Cell by James W. MacDonald 68k

Put it in a list and put the list in a column.

Comment: For some reason I can't update BiocManager to 3.20 by James W. MacDonald 68k

Please post output from starting R and then running `sessionInfo()` (as requested by the web form you use to post questions). I get ``` > …

Comment: p-value the same for different contrasts DESeq2 by caroline.zanchi • 0

It would be great if it were possible to do something similar using GlmGamPoi !

Comment: Web accessibility of Bioconductor.org by Sean Davis 21k

Added issue to website github repo: https://github.com/Bioconductor/bioconductor.org/issues/304

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Answer: Standardization of rlog transformed counts before PCA

A: Rtracklayer fails to export TxDb as GFF3 without CDS

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Popular Question to Robert Castelo ★ 3.4k