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Comment: Transcript-level differential expression using DESeq2
by
Michael Love
36k
Did you see the part of the vignette where we talk about this? https://bioconductor.org/packages/release/bioc/vignettes/fishpond/inst/doc/…
Comment: Transcript-level differential expression using DESeq2
by
Ekta
• 0
Hi Michael, thanks for your reply. One more question. If the qvalue (and pvalue) for all DTEs are the same, the Volcano plot will look lik…
Comment: R: problem with running time-series analysis software: Mfuzz
by
soda
▴ 80
I have solved this problem by myself. My data.frame is not suitable for Mfuzz.
Comment: R: problem with running time-series analysis software: Mfuzz
by
Kevin Blighe
3.5k
Cross-posted: https://www.biostars.org/p/9524023/
Comment: ROC plot for OPLS-DA
by
Eddie
• 0
Hi, That was helpful. Thank you. How to do the same for the testing data?
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Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
Answer: How to best visualize multi-level transcriptomics experiment data?
A: Interpreting results of sample-to-sample PCA/clustering and changing assignment
C: DESeq2 - Differences between plotCounts and normalized counts
C: DESEq2 - Change reference level change "Contrasts" results
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