Bioconductor Genes

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291

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DESeq2 genes Differential expressed

4 months ago Syed Zaheer ▴ 10

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475

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GeneSetEnrichment genes genetogo

updated 15 months ago by Basti ▴ 720 • written 15 months ago by Noy • 0

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482

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R microRNA genes binding Site

4.2 years ago pengu447 • 0

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911

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edger differential expression genes fold change

updated 4.2 years ago by Aaron Lun ★ 28k • written 4.2 years ago by ilovesuperheroes1993 • 0

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544

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deseq2 genes expression

updated 4.5 years ago by Michael Love 40k • written 4.5 years ago by UserAnonyme • 0

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879

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topGO significant enrichment genes IDs

4.7 years ago David ROUX ▴ 20

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714

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deseq2 variance genes

updated 5.8 years ago by Michael Love 40k • written 5.8 years ago by hs.lansdell ▴ 20

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944

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cnv genes genomic ranges splitByOverlap

updated 6.4 years ago by Martin Morgan 25k • written 6.4 years ago by julrodr80 ▴ 30

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612

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deseq2 genes

updated 7.1 years ago by Michael Love 40k • written 7.1 years ago by silviajserrano • 0

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2.4k

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deseq2 wald lrt genes significance

updated 7.3 years ago by Michael Love 40k • written 7.3 years ago by aziza ▴ 20

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2.1k

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heatmap rownames genes

8.0 years ago johnlee.johnson • 0

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1.0k

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datasets genes gene expression

updated 8.1 years ago by Steve Lianoglou 13k • written 8.1 years ago by vavecilla • 0

12 results • Page 1 of 1

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Comment: Manual creation of qPCRset does not work by Ed Siefker ▴ 230

Thanks! This works for me.

Answer: Manual creation of qPCRset does not work by James W. MacDonald 63k

``` > mat <- matrix(rnorm(6*96), ncol = 6, nrow = 96, byrow = FALSE) > pd <- new("AnnotatedDataFrame", data = data.frame(1:6, row.names …

Answer: ukb Chromosomal position information was converted into SNPS by James W. MacDonald 63k

In my work, we almost always convert RSIDs to chr:pos because the former is ambiguous and changing whereas the latter is not. Which is like…

Comment: T.fit function of maSigPro returns error message by hanna.g • 0

Addition to the issue above: the T.fit function works only when choosing the step.method = "forward", for whatever reason. Maybe this clue …

Answer: Deseq2, enrichGO and ensembl ID by James W. MacDonald 63k

1. There isn't a keytype alternative. You need the gene IDs. 2. Convert the `rownames` of your 'se' object, or the `rownames` of your `D…

Votes

Answer: Manual creation of qPCRset does not work

Answer: MDS plot edgeR

A: legend with gradient in ComplexHeatmap

Comment: comparing contrasts in edger/lima using makeContrasts function

Answer: comparing contrasts in edger/lima using makeContrasts function

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