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genes
•
reset
0
votes
2
replies
481
views
Deseq2 design
DESeq2
genes
Differential
expressed
11 months ago
Syed Zaheer
▴ 10
0
votes
1
reply
845
views
enrichment to common gene
GeneSetEnrichment
genes
genetogo
updated 22 months ago by
Basti
▴ 770 • written 22 months ago by
Noy
• 0
0
votes
1
reply
599
views
find genes near a microRNA binding site
R
microRNA
genes
binding Site
4.8 years ago
pengu447
• 0
2
votes
4
replies
1.2k
views
Majority upregulated genes in edgeR
edger
differential expression
genes
fold change
updated 4.8 years ago by
Aaron Lun
★ 28k • written 4.8 years ago by
ilovesuperheroes1993
• 0
1
vote
2
replies
687
views
Two factors design with DESEq2
deseq2
genes
expression
updated 5.0 years ago by
Michael Love
41k • written 5.0 years ago by
UserAnonyme
• 0
1
vote
1
reply
1.1k
views
How to retreive topGO significant IDs of genes after enrichment test ?
topGO
significant
enrichment
genes
IDs
5.2 years ago
David ROUX
▴ 20
0
votes
1
reply
899
views
Running DESeq2 on top variable genes?
deseq2
variance
genes
updated 6.4 years ago by
Michael Love
41k • written 6.4 years ago by
hs.lansdell
▴ 20
2
votes
2
replies
1.1k
views
list fo genes by cnv
cnv
genes
genomic ranges
splitByOverlap
updated 7.0 years ago by
Martin Morgan
25k • written 7.0 years ago by
julrodr80
▴ 30
0
votes
1
reply
697
views
No differentyally expresses genes
deseq2
genes
updated 7.7 years ago by
Michael Love
41k • written 7.7 years ago by
silviajserrano
• 0
0
votes
3
replies
2.6k
views
Wald vs LRT: different number of significant genes when testing the same coefficient
deseq2
wald
lrt
genes
significance
updated 7.8 years ago by
Michael Love
41k • written 7.8 years ago by
aziza
▴ 20
0
votes
1
reply
2.4k
views
Display subset of rownames in large heatmap?
heatmap
rownames
genes
8.6 years ago
johnlee.johnson
• 0
0
votes
2
replies
1.2k
views
Help needed to identify common genes among datasets
datasets
genes
gene expression
updated 8.6 years ago by
Steve Lianoglou
★ 13k • written 8.6 years ago by
vavecilla
• 0
12 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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