Bioconductor Genes

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1.1k

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cnv genes genomic ranges splitByOverlap

updated 7.0 years ago by Martin Morgan 25k • written 7.0 years ago by julrodr80 ▴ 30

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1.2k

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edger differential expression genes fold change

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by ilovesuperheroes1993 • 0

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693

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deseq2 genes expression

updated 5.1 years ago by Michael Love 41k • written 5.1 years ago by UserAnonyme • 0

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1.1k

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topGO significant enrichment genes IDs

5.2 years ago David ROUX ▴ 20

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907

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deseq2 variance genes

updated 6.4 years ago by Michael Love 41k • written 6.4 years ago by hs.lansdell ▴ 20

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601

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R microRNA genes binding Site

4.8 years ago pengu447 • 0

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859

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GeneSetEnrichment genes genetogo

updated 22 months ago by Basti ▴ 780 • written 22 months ago by Noy • 0

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1.2k

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datasets genes gene expression

updated 8.7 years ago by Steve Lianoglou ★ 13k • written 8.7 years ago by vavecilla • 0

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487

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DESeq2 genes Differential expressed

11 months ago Syed Zaheer ▴ 10

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2.4k

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heatmap rownames genes

8.6 years ago johnlee.johnson • 0

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2.6k

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deseq2 wald lrt genes significance

updated 7.9 years ago by Michael Love 41k • written 7.9 years ago by aziza ▴ 20

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698

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deseq2 genes

updated 7.7 years ago by Michael Love 41k • written 7.7 years ago by silviajserrano • 0

12 results • Page 1 of 1

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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0

Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough? Thank …

Votes

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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Supporter to JKim • 0