Bioconductor Genesymbols

Showing : genesymbols • reset

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org.hs.eg.db entrez gene identifiers genesymbols

updated 5.8 years ago by mat149 ▴ 70 • written 5.8 years ago by imalumberjack ▴ 10

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gviz ucsctrack genesymbols

7.1 years ago dmb107 • 0

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annotation genesymbols meta analysis

7.6 years ago wahaha123 • 0

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filtering bioconductor genesymbols expressionset

8.7 years ago svlachavas ▴ 820

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Comment: Why is DMRcate not available for Bioconductor version 3.18? by shepherl 3.6k

The DSS package authors just need to add `edgeR` to their Suggest of their DESCRIPTION. They have been contacted about it but have not acte…

Answer: GOslim missing GO term by James W. MacDonald 64k

I think it's because that GO term isn't an offspring of any term in the GO slim you are downloading. ``` > ids<- "GO:0002831" > slim <…

Answer: Obtaining rsIDs with ENSG and variant ID information by Robert Castelo ★ 3.0k

You should first and foremost find out what was the human reference genome version from which your dataset was derived. Assuming this was G…

Comment: DESeq2 - groups with biological replicates from the same patient by James W. MacDonald 64k

If by clustering you mean there might be a within-subject correlation, then yes it's a possibility. But you cannot control for that using a…

Comment: Why is DMRcate not available for Bioconductor version 3.18? by Mike Smith ★ 6.2k

If we hover over the tiny little red icon next to the Linux build report, we can see that the source package isn't being distributed becaus…

Votes

Comment: limma::voom vs edgeR::voomLmFit - when to use?

Answer: limma::voom vs edgeR::voomLmFit - when to use?

Answer: trying to add SingleR label to Seurat Object fails

Comment: DESeq2 - groups with biological replicates from the same patient

Answer: EdgeR: Exact test and glmQLFTest produce very different results

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Scholar to James W. MacDonald 64k

Scholar to Assa Yeroslaviz ★ 1.5k