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genesymbols
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Question about converting rownames of an expression dataset to their corresponding gene symbols
filtering
bioconductor
genesymbols
expressionset
9.0 years ago
svlachavas
▴ 830
2
votes
3
replies
1.6k
views
combine different GSE on different GPL
annotation
genesymbols
meta analysis
8.0 years ago • updated 7.9 years ago
wahaha123
• 0
1
vote
3
replies
12k
views
Converting gene symbol list to Entrez IDs
org.hs.eg.db
entrez gene identifiers
genesymbols
updated 6.1 years ago by
mat149
▴ 70 • written 6.1 years ago by
imalumberjack
▴ 10
0
votes
0
replies
1.0k
views
gviz UcscTrack label with HGNC gene symbol
gviz
ucsctrack
genesymbols
7.4 years ago
dmb107
• 0
4 results • Page
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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