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13k
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1000 R tutorials/Links
Sequencing
Microarray
Genetics
Visualization
Network
Bayesian
Classification
Clustering
12.0 years ago
David Lyon
▴ 320
0
votes
4
replies
12k
views
Normalization by DEseq
Genetics
Normalization
DESeq
Genetics
Normalization
DESeq
updated 4.2 years ago by
diannedai
• 0 • written 11.6 years ago by
Rui Luo
▴ 20
2
votes
7
replies
3.8k
views
Extend GRanges start/end
Genetics
GenomicFeatures
Genetics
GenomicFeatures
updated 9.6 years ago by
Michael Lawrence
11k • written 9.6 years ago by
António Miguel de Jesus Domingues
▴ 480
0
votes
2
replies
3.5k
views
GeneticsPed Pedigree object creation error: recursive indexing failed at level 2
Genetics
GeneticsPed
Genetics
GeneticsPed
updated 8.8 years ago by
Dan Tenenbaum
★ 8.2k • written 8.8 years ago by
Liz Hare
▴ 30
0
votes
0
replies
3.4k
views
Bioconductor 2.13 is released
BiocViews
aCGH
SNP
Transcription
Sequencing
miRNA
Microarray
Genetics
Proteomics
Coverage
8.6 years ago
Dan Tenenbaum
★ 8.2k
0
votes
1
reply
3.1k
views
DESeq2 - factor base level changes the DE genes.
RNASeq
Genetics
DESeq2
RNASeq
Genetics
DESeq2
updated 7.6 years ago by
Michael Love
37k • written 7.9 years ago by
Guest User
★ 12k
0
votes
0
replies
2.6k
views
ComBat
Transcription
Genetics
Pathways
Network
Survival
Cancer
Breast
Colon
Kidney
Leukemia
HIV
9.6 years ago
SSc Array Core
▴ 10
0
votes
0
replies
2.6k
views
Bioconductor 2.11 is released
BiocViews
SNP
Transcription
Sequencing
miRNA
Microbiome
Microarray
qPCR
Genetics
Coverage
9.6 years ago
Dan Tenenbaum
★ 8.2k
0
votes
1
reply
2.6k
views
problems generating a gene2GOlist in topGO
Genetics
Annotation
GO
hgu95av2
convert
biomaRt
topGO
Genetics
Annotation
GO
hgu95av2
updated 10.2 years ago by
Adrian Alexa
▴ 400 • written 10.2 years ago by
António Miguel de Jesus Domingues
▴ 480
1
vote
12
replies
2.5k
views
Problem running summarizeOverlaps()
Genetics
Genetics
updated 6.3 years ago by
shania90.lk
▴ 10 • written 8.0 years ago by
Jessica Perry Hekman
▴ 140
1
vote
3
replies
2.5k
views
Limma: correct calculation of B statistics (log odds)
Microarray
Genetics
limma
limmaGUI
Microarray
Genetics
limma
limmaGUI
updated 16.1 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 16.1 years ago by
Gordon Smyth
45k
0
votes
1
reply
2.2k
views
cause 'memory not mapped'
Microarray
Genetics
Normalization
affy
Microarray
Genetics
Normalization
affy
updated 11.0 years ago by
Paul Geeleher
★ 1.3k • written 11.0 years ago by
Won Cheol Yim
▴ 10
0
votes
1
reply
2.2k
views
BIRD 2008
Genetics
Pathways
Cancer
PROcess
microRNA
a4
Genetics
Pathways
Cancer
PROcess
microRNA
14.6 years ago • updated 14.5 years ago
Prof. Roland Wagner
▴ 100
0
votes
3
replies
2.2k
views
Outlier detection in DEseq
Genetics
DESeq
Genetics
DESeq
updated 11.6 years ago by
Simon Anders
★ 3.7k • written 11.6 years ago by
Rui Luo
▴ 20
0
votes
0
replies
2.1k
views
Postdoctoral Fellow - Bioinformatics - Singapore, IMCB, Biopolis
Genetics
Metabolomics
Pathways
Cancer
Genetics
Metabolomics
Pathways
Cancer
10.7 years ago
Emilie Bard
▴ 10
0
votes
8
replies
1.9k
views
Expected number of DE genes?
Genetics
edgeR
DESeq2
Genetics
edgeR
DESeq2
updated 7.9 years ago by
Thomas Hampton
▴ 750 • written 7.9 years ago by
Jessica Perry Hekman
▴ 140
0
votes
2
replies
1.9k
views
limma, spot and technical replicates
Genetics
limma
limmaGUI
Genetics
limma
limmaGUI
updated 16.5 years ago by
STKH Steen Krogsgaard
▴ 150 • written 16.5 years ago by
Cecilia McGregor
▴ 110
0
votes
2
replies
1.8k
views
Possible bug in sva package regarding ComBat and use of numCovs
Genetics
sva
Genetics
sva
updated 10.3 years ago by
Jeff Leek
▴ 610 • written 10.3 years ago by
Djie Tjwan Thung
▴ 90
0
votes
0
replies
1.8k
views
Two bioinformatics positions in Bordeaux, France
SNP
Sequencing
Genetics
Cancer
Breast
SNP
Sequencing
Genetics
Cancer
Breast
12.1 years ago
Audrey Kauffmann
▴ 110
2
votes
0
replies
1.8k
views
Job:
Job Opening: Computational Biologist @ Genentech Bioinformatics
Job
Sequencing
Genetics
Cancer
updated 7.7 years ago by
Dan Tenenbaum
★ 8.2k • written 7.7 years ago by
Michael Lawrence
11k
0
votes
1
reply
1.7k
views
forward conditional Cox and logistic regression
Genetics
Regression
Survival
Genetics
Regression
Survival
updated 13.5 years ago by
Laurent Gautier
★ 2.3k • written 13.5 years ago by
Katleen De Preter
▴ 130
0
votes
0
replies
1.7k
views
SRAdb package - problems
Genetics
SRAdb
Genetics
SRAdb
9.0 years ago
Jack Zhu
▴ 170
0
votes
5
replies
1.7k
views
mRNA-seq cross-species analysis, is it possible?
Genetics
Normalization
Proteome
DESeq
Genetics
Normalization
Proteome
DESeq
updated 10.8 years ago by
Davis McCarthy
▴ 20 • written 10.8 years ago by
mali salmon
▴ 350
0
votes
0
replies
1.6k
views
Job:
Abbvie -- Senior Manager/Associate Director, Exploratory Statistics
genomics
genetics
proteomics
rnaseq
microarray
Job
7.2 years ago
Feng Hong
• 0
0
votes
1
reply
1.6k
views
estimateDispersions in DESeq
Genetics
graph
DESeq
Genetics
graph
DESeq
updated 9.9 years ago by
Wolfgang Huber
13k • written 9.9 years ago by
Flavia Nunes
▴ 10
0
votes
0
replies
1.6k
views
voom and RPKM for multi-species RNA-seq analysis
Genetics
DESeq
Genetics
DESeq
9.0 years ago
Julien Roux
▴ 90
0
votes
0
replies
1.5k
views
Postdoctoral position for 'Statistical Methods in Bioinformatics'
Genetics
HIV
Genetics
HIV
15.5 years ago
Adrian Alexa
▴ 400
1
vote
0
replies
1.5k
views
Job:
Bioinformatics / Biostatistics in genetic interaction analysis
high-throughput screening
interactions
genetics
jobs
image analysis
Job
7.1 years ago
Bernd Fischer
▴ 550
0
votes
3
replies
1.5k
views
Error running makeTranscriptDbFromGFF in GenomicFeatures
Genetics
TranscriptDb
GenomicFeatures
updated 7.7 years ago by
Michael Lawrence
11k • written 7.7 years ago by
Jon Bråte
▴ 190
0
votes
0
replies
1.5k
views
Plot exon number per gene and transcript lengths
Genetics
TranscriptDb
GenomicFeatures
7.7 years ago
Jon Bråte
▴ 190
2
votes
0
replies
1.5k
views
Job:
23andMe Job Opportunities
bioinformatician job
bioinformatics scientist
genetics
Job
7.0 years ago
rgentleman
★ 5.5k
0
votes
0
replies
1.5k
views
Postdoctoral positions at Harvard
Genetics
Cancer
Yeast
Genetics
Cancer
Yeast
11.8 years ago
Edo Airoldi
▴ 10
0
votes
9
replies
1.4k
views
Encrypting IDAT files using IDATreader
Genetics
Genetics
updated 9.7 years ago by
Mike Smith
★ 5.5k • written 9.8 years ago by
Yoo, Seungyeul
▴ 110
0
votes
2
replies
1.4k
views
UCSC data anomaly in 50638 transcript(s): the cds cumulative length is
Genetics
GO
Regression
Cancer
TranscriptDb
Genetics
GO
Regression
Cancer
TranscriptDb
updated 8.0 years ago by
Tarca, Adi
▴ 570 • written 8.0 years ago by
Hervé Pagès
15k
0
votes
12
replies
1.4k
views
Biomart server down?
Genetics
Cancer
biomaRt
Genetics
Cancer
biomaRt
updated 11.0 years ago by
Rhoda Kinsella
▴ 660 • written 11.0 years ago by
Alistair Rust
▴ 20
0
votes
0
replies
1.4k
views
Job:
Postdoc and PhD student in Bioinformatics/Biostatistics
genomics
NGS
R
genetics
statistics
3.9 years ago • updated 18 months ago
Luo Weijun
★ 1.5k
0
votes
0
replies
1.3k
views
Postdoc positions at the Cancer Research UK Cambridge Research Institute
SNP
Genetics
Pathways
Cancer
CGH
microRNA
SNP
Genetics
Pathways
Cancer
CGH
microRNA
13.6 years ago
Florian Markowetz
▴ 20
0
votes
0
replies
1.3k
views
Deferential gene expression databases
Microarray
Genetics
Annotation
Normalization
Pathways
GO
Cancer
BSgenome
probe
annotate
10.3 years ago
saikouy bah
▴ 30
3
votes
5
replies
1.3k
views
How to Find Common Dysregulated Genes in Two or More Sets of Microarray Data?
disease
genetics
micro array data
microarray
updated 7.1 years ago by
Gordon Smyth
45k • written 7.1 years ago by
pankajnarula84
▴ 20
0
votes
5
replies
1.3k
views
downloading different kinds of microarray data
Sequencing
Microarray
Genetics
Annotation
gpls
convert
GEOquery
GEOmetadb
Sequencing
gpls
updated 11.8 years ago by
Alex Levitchi
▴ 30 • written 11.8 years ago by
Sean Davis
21k
0
votes
0
replies
1.3k
views
Bioinformatics Scientist opening in a startup on human genome interpretaion
Genetics
Genetics
9.8 years ago
Rong Chen
▴ 10
0
votes
0
replies
1.3k
views
BIRD 2008 Conference Call for papers
Genetics
Pathways
Cancer
microRNA
Genetics
Pathways
Cancer
microRNA
14.4 years ago
Prof. Roland Wagner
▴ 100
0
votes
0
replies
1.2k
views
BIRD 2008 Conference
Genetics
Pathways
Cancer
microRNA
Genetics
Pathways
Cancer
microRNA
14.4 years ago
Prof. Roland Wagner
▴ 100
0
votes
0
replies
1.2k
views
Postdoctoral positions at EMBL
Sequencing
Genetics
GO
Network
Cancer
genomes
Sequencing
Genetics
GO
Network
Cancer
10.7 years ago
Wolfgang Huber
13k
0
votes
0
replies
1.2k
views
Statistical Genetics Post-doc position available in Melbourne
Genetics
Genetics
9.0 years ago
Lavinia Gordon
▴ 480
0
votes
4
replies
1.2k
views
DexSeq extracols option
RNASeq
Microarray
Genetics
Annotation
Normalization
Infrastructure
Cancer
probe
limma
updated 8.8 years ago by
Alejandro Reyes
★ 1.8k • written 8.8 years ago by
Ioannis Vlachos
▴ 40
0
votes
0
replies
1.2k
views
Job in GWAS / Next Gen Sequencing / genetics
Sequencing
Genetics
Sequencing
Genetics
8.7 years ago
Paul Leo
▴ 970
0
votes
3
replies
1.2k
views
RMA + loess normalisation and filtering
Genetics
Normalization
Genetics
Normalization
updated 17.1 years ago by
Wolfgang Huber
13k • written 17.1 years ago by
Katleen De Preter
▴ 130
0
votes
0
replies
1.2k
views
Bioinformatician Job at Pirbright Institute
Genetics
Infrastructure
Genetics
Infrastructure
9.5 years ago
Jan T Kim
▴ 50
0
votes
0
replies
1.2k
views
R functions for genetic distances
SNP
Genetics
convert
SNP
Genetics
convert
12.0 years ago
Waddell, Peter J
▴ 10
50 results • Page
1 of 1
Recent ...
Replies
Comment: regression analysis for epic array methylation data using limma
by
nabiyogesh
▴ 10
Dear Basti, thank you so much! Could you please also help me how to arrange samples in the same order in rows (targests2) and columns in (…
Comment: How to figure out the FC value from Limma
by
ATpoint
★ 1.2k
You probably have opened that file in Excel before. Get it again directly from GEO2R, or even better take the R script GEO2R offers and run…
Comment: regression analysis for epic array methylation data using limma
by
Basti
▴ 280
The columns of your design matrix `var` corresponds to the coefficients that are fitted by limma. If you check your design matrix, you will…
Comment: How to figure out the FC value from Limma
by
beslinail
• 0
I tried to FC column to dbl from chr. But FC colomn is changed by NA genlist_filter <- read_csv(file = "AD_control5.csv") gen…
Comment: WGCNA: correlations module-traits, and module membership-gene significance
by
annamariabugaj
▴ 10
Hello, sorry for my late response. this is the heatmap: https://drive.google.com/file/d/165fizcsWcA2uzRPVV2cKNPOcqM1d2WfG/view?usp=sharing…
Votes
Answer: Limma for paired and unpaired samples. Strange number of DEGs in unpaired sample
A: Very low EdgeR Pvalues with very small sample size
A: Very low EdgeR Pvalues with very small sample size
Comment: Question on RNA-Seq single sample data analysis in EdgeR
Answer: Question on RNA-Seq single sample data analysis in EdgeR
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Basti
▴ 280
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Robert Castelo
★ 2.9k
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to
Gordon Smyth
45k
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andrebolerbarros
▴ 10
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James W. MacDonald
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