Bioconductor Genomeinfodbdata

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GenomeInfoDbData

updated 6 months ago by shepherl 3.8k • written 6 months ago by remi.trimbour • 0

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GenomeInfoDbData

8 months ago 15753563659 ▴ 50

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GenomeInfoDbData genomeinfodbdata

updated 8 months ago by James W. MacDonald 65k • written 8 months ago by 15753563659 ▴ 50

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697

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GenomeInfoDb GenomeInfoDbData

updated 14 months ago by ATpoint ★ 4.0k • written 14 months ago by exferin • 0

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GenomeInfoDbData microbiome phyloseq

updated 20 months ago by Marcel Ramos 690 • written 20 months ago by kikiki • 0

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DESeq2 RStudio GenomeInfoDbData hadnon-zeroexitstatus

updated 19 months ago by wshao9 • 0 • written 21 months ago by JoseR • 0

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GenomeInfoDb GenomeInfoDbData GenomicDistributionsData GenomicDistributions

22 months ago rashford • 0

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1.8k

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GenomeInfoDbData phyloseq dada2

2.3 years ago ymtan • 0

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GenomeInfoDbData

3.0 years ago ettore64 ▴ 10

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GenomeInfoDbData "GenomeInfoDbData"package

updated 2.2 years ago by Hervé Pagès 16k • written 3.4 years ago by N.D.Hubot • 0

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970

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install GenomeInfoDbData

updated 4.0 years ago by James W. MacDonald 65k • written 4.0 years ago by lina.bird • 0

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604

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genomeinfodbdata

updated 5.2 years ago by Martin Morgan 25k • written 5.2 years ago by hdwhitti • 0

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1.8k

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software error ballgown genomeinfodbdata genomeinfodb

updated 5.6 years ago by James W. MacDonald 65k • written 5.6 years ago by dualeahmed • 0

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1.5k

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bioconductor GenomeInfoDbData

5.8 years ago svetlana.gorokhova • 0

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17k

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dada2 GenomeInfoDbData

updated 6.8 years ago by jiangjing_ing • 0 • written 6.9 years ago by navlern • 0

15 results • Page 1 of 1

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Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…

Comment: PCA plot suggestions by JKim • 0

cross post: https://www.biostars.org/p/9593486/

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…

Votes

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0