Bioconductor Genomeintervals

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914

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genomeIntervals genomeIntervals

updated 13.1 years ago by Hervé Pagès 16k • written 13.1 years ago by Julien Gagneur ▴ 50

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1.3k

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nclist genomeintervals

updated 8.2 years ago by Hervé Pagès 16k • written 8.2 years ago by Jurat Shahidin ▴ 80

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1.6k

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genomeintervals UTRs exons CDS GenomicRanges

updated 6.7 years ago by Michael Lawrence ★ 11k • written 6.7 years ago by rubi ▴ 110

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1.4k

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granges bed genomicranges genomeintervals deseq2

6.3 years ago rbronste ▴ 60

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2.6k

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BSgenome hexbin BSgenome IRanges genomeIntervals GenomicRanges girafe Rsamtools HiTC HiTC

updated 11.1 years ago by Dan Tenenbaum ★ 8.2k • written 11.1 years ago by Wim Kreinen ▴ 100

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1.2k

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genomeIntervals

updated 8.8 years ago by Nicolas Delhomme ▴ 320 • written 9.1 years ago by mhz • 0

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1.6k

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genomeintervals

updated 8.8 years ago by Nicolas Delhomme ▴ 320 • written 8.9 years ago by sjackman • 0

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Sequencing Annotation GO rtracklayer IRanges genomeIntervals Sequencing Annotation GO

14.2 years ago Robert Castelo ★ 3.3k

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877

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Annotation convert genomeIntervals Annotation convert genomeIntervals

12.2 years ago delhomme@embl.de ★ 1.2k

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102

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genomeIntervals GenomicRanges

29 days ago gshweta95 • 0

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Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Comment: minfi::read.metharray.exp by clacarion • 0

Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…

Votes

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

Answer: Cannabis OrgDb

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