Showing : genomes • reset
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Job: Bioinformatics Research Associate in Transcriptomics, Epigenomics and Multi-omics
genomes
5 months ago JP Carter ▴ 40
0
votes
0
replies
344
views
Job: Bioinformatics Research Associate, Genomics and Genetics
genomes Genetics
5 months ago JP Carter ▴ 40
1
vote
1
reply
405
views
MSc student
genomes
updated 15 months ago by ▴ 780 • written 15 months ago by • 0
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2
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2.6k
views
How to get the rsID of 4 million SNPA
ensembldb SNP SNPData genomes
written 2.2 years ago by • 0
0
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0
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830
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How to assign custom colour codes for Multiple sequence alignment (MSA)?
Phylogenetics genomes R MultipleSequenceAlignment Bioconductor
2.7 years ago K. • 0
1
vote
0
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1.4k
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Job: Bioinformatician/Computational Biologist - Dublin City, Ireland
bioinformatician job computational biology genomes pathways machine learning Job
6.5 years ago bulfin.triona ▴ 10
0
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0
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969
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How to generate CpG island Unmasked.bed file format for finding CpG island shores and shelves?
bioconductor annotation rtracklayer genomes homo.sapiens
6.8 years ago sivabala76 • 0
0
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5
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1.4k
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Extracting all possible annotations between two genomic coordinates
genomes
7.2 years ago KB ▴ 50
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0
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1.1k
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vizualization of mutations
genomes SNP
7.6 years ago Bogdan ▴ 670
0
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0
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1.7k
views
Job: Postdoc / Computational Biologist for circulating tumor DNA/RNA profiling at Memorial Sloan Kettering Cancer Center MSKCC, New York
cancer sequencing genetics genomes diagnostic Job
7.6 years ago dtlabmskcc • 0
1
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1
reply
1.6k
views
GenomeViz
Proteomics genomes Proteomics genomes
updated 8.2 years ago by • 0 • written 19.3 years ago by ▴ 80
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1
reply
1.2k
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Request: Add Macaca fascicularis genome to BSgenome
bsgenome genomes
updated 8.9 years ago by 16k • written 8.9 years ago by • 0
0
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0
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1.5k
views
Job: Harvard Medical School: Postdoctoral Opportunity
genomes Job
9.6 years ago Doe, Aimee ▴ 40
0
votes
8
replies
2.8k
views
Best practices to find intersection among variants
VariantAnnotation genomes VariantAnnotation VariantAnnotation genomes VariantAnnotation
updated 9.7 years ago by ★ 1.3k • written 9.7 years ago by ▴ 220
2
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3
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5.1k
views
Linkage disequilibrium with 1000 Genomes/HapMap
HapMap genomes HapMap genomes
9.8 years ago enricoferrero ▴ 660
0
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3
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1.5k
views
Elephant shark genome
Biostrings genomes Biostrings genomes
updated 10.0 years ago by 25k • written 10.0 years ago by ★ 13k
0
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1
reply
2.0k
views
It works! RE: So close, but still error: RE: Rsamtools filtering bam file: RE: MEDIPS.createSet error
Alignment GO Cancer BSgenome BSgenome Rsamtools genomes MEDIPS Alignment GO Cancer
updated 10.0 years ago by ▴ 570 • written 10.1 years ago by ▴ 220
0
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1
reply
1.5k
views
GOseq with ce6
GO Yeast Organism goseq genomes GO Yeast Organism goseq genomes
updated 10.0 years ago by ▴ 310 • written 10.0 years ago by ▴ 50
0
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0
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1.5k
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Trying to use BSgenome.Hsapiens.NCBI.GRCh38
Cancer BSgenome BSgenome genomes Cancer BSgenome BSgenome genomes
10.1 years ago Hervé Pagès 16k
0
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1
reply
1.7k
views
So close, but still error: RE: Rsamtools filtering bam file: RE: MEDIPS.createSet error
Alignment GO Cancer BSgenome BSgenome Rsamtools genomes MEDIPS Alignment GO Cancer
updated 10.1 years ago by ▴ 570 • written 10.1 years ago by ▴ 220
0
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5
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1.9k
views
Rsamtools filtering bam file: RE: MEDIPS.createSet error
GO BSgenome BSgenome Rsamtools genomes MEDIPS GO BSgenome BSgenome Rsamtools genomes
updated 10.1 years ago by 25k • written 10.1 years ago by ▴ 220
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3
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1.9k
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Find enriched GO terms, given a list of GO terms of interest and background GO terms
Annotation GO topGO genomes Annotation GO topGO genomes
10.3 years ago Guest User ★ 13k
0
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1
reply
1.6k
views
makeTranscriptDbFromUCSC() error
genomes genomes
10.3 years ago Chris Cabanski ▴ 30
0
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2
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2.2k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Transcription HapMap PolyPhen SIFT convert genomes ensemblVEP Transcription HapMap SIFT
updated 10.3 years ago by ★ 6.8k • written 10.3 years ago by ▴ 30
0
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1
reply
2.3k
views
Pairwise Alignment on Large Protein Sequence Data Set
Alignment genomes Alignment genomes
updated 10.4 years ago by 16k • written 10.4 years ago by ★ 13k
0
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0
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1.5k
views
Gviz and Leishmania genomes
rtracklayer genomes Gviz rtracklayer genomes Gviz
10.4 years ago florian.hahne@novartis.com ★ 1.6k
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0
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1.8k
views
Create a sample file /tab delimited file in QuasR
BSgenome convert BSgenome genomes QuasR BSgenome convert BSgenome genomes QuasR
10.5 years ago Michael Stadler ▴ 350
0
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1
reply
1.6k
views
makeTranscriptDbFromGFF fails on NCBI Bacteria genomes
GO TranscriptDb goseq genomes GO TranscriptDb goseq genomes
updated 10.5 years ago by ★ 7.2k • written 10.5 years ago by ▴ 80
0
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1
reply
1.5k
views
Lifting over a bam file with Rsamtools and GenomicRanges
GenomicRanges genomes GenomicRanges genomes
updated 10.6 years ago by ★ 11k • written 10.6 years ago by ★ 13k
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0
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1.2k
views
SnpStats - STRING_ELT() error and Fst
genomes genomes
10.6 years ago Voke AO ▴ 760
0
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1
reply
1.3k
views
Working with non-type strain annotation
Proteomics GO genomes Proteomics GO genomes
updated 10.9 years ago by ★ 7.2k • written 11.0 years ago by ▴ 70
0
votes
8
replies
3.2k
views
QuasR: how to use an indexed reference genome?
BSgenome BSgenome genomes QuasR BSgenome BSgenome genomes QuasR
updated 10.9 years ago by ▴ 350 • written 10.9 years ago by ▴ 750
0
votes
2
replies
1.6k
views
QuasR special case alignment
Alignment genomes QuasR Alignment genomes QuasR
updated 11.0 years ago by ▴ 340 • written 11.0 years ago by ▴ 350
0
votes
6
replies
1.6k
views
coverage on very large ReadGappedAlignmentsObject
Coverage genomes Coverage genomes
updated 11.0 years ago by 25k • written 11.0 years ago by ▴ 360
0
votes
1
reply
1.9k
views
Help needed! What wrong with VariantAnnotation and TCGA vcfs
VariantAnnotation genomes VariantAnnotation VariantAnnotation genomes VariantAnnotation
updated 11.0 years ago by 25k • written 11.0 years ago by ▴ 340
0
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0
replies
1.5k
views
Useful information about Ensembl release 71 mart databases
zebrafish PolyPhen SIFT affy genomes zebrafish PolyPhen SIFT affy genomes
11.0 years ago Thomas Maurel ▴ 800
0
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0
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1.4k
views
Biostatistician position in London
Cancer genomes Cancer genomes
11.1 years ago Kathi Zarnack ▴ 110
0
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2
replies
1.5k
views
Limit on number of sequence files for forging a BSgenome
GO Cancer BSgenome BSgenome genomes GO Cancer BSgenome BSgenome genomes
11.1 years ago Hervé Pagès 16k
3
votes
4
replies
1.2k
views
Limit on number of sequence files for forging a BSgenome
BSgenome BSgenome genomes BSgenome BSgenome genomes
updated 11.1 years ago by ★ 6.5k • written 11.1 years ago by ▴ 220
0
votes
2
replies
999
views
Expected value of finding a sequence (Tim Smith)
genomes genomes
updated 11.1 years ago by ▴ 10 • written 11.1 years ago by ▴ 80
0
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0
replies
1.3k
views
Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
zebrafish biomaRt ideogram genomes zebrafish biomaRt ideogram genomes
11.2 years ago florian.hahne@novartis.com ★ 1.6k
0
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0
replies
1.2k
views
Useful information about Ensembl release 70 mart databases
genomes genomes
11.2 years ago Thomas Maurel ▴ 800
0
votes
3
replies
1.3k
views
VCF predictCoding(...) providing inconsistent results?
genomes genomes
11.3 years ago Murat Tasan ▴ 70
0
votes
3
replies
2.3k
views
seqlevels in VCF objects
BSgenome BSgenome genomes BSgenome BSgenome genomes
updated 11.3 years ago by ★ 6.8k • written 11.3 years ago by ▴ 70
0
votes
2
replies
1.2k
views
Granges averaging
genomes genomes
updated 11.6 years ago by 16k • written 11.6 years ago by ▴ 40
0
votes
2
replies
1.5k
views
VariantAnnotation: readVcf on nonmodel organism
Organism genomes Organism genomes
updated 11.6 years ago by ★ 6.8k • written 11.6 years ago by ▴ 40
0
votes
2
replies
1.6k
views
Building custom genome in MeDIPS
BSgenome BSgenome genomes MEDIPS BSgenome BSgenome genomes MEDIPS
updated 11.6 years ago by 65k • written 11.6 years ago by ▴ 10
0
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0
replies
1.1k
views
regarding mapping package
Cancer genomes Rsubread gmapR Cancer genomes Rsubread gmapR
11.7 years ago Martin Morgan 25k
0
votes
1
reply
966
views
How to use cutome reference genome?
BSgenome BSgenome genomes MEDIPS BSgenome BSgenome genomes MEDIPS
updated 11.7 years ago by ★ 6.5k • written 11.7 years ago by ★ 13k
0
votes
0
replies
1.3k
views
Job: Research Associate in Bioinformatics, Cambridge, UK
Sequencing genomes Sequencing genomes
11.7 years ago Krys Kelly ▴ 270
50 results • Page 1 of 1
Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…
Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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